DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and tia1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_012814227.2 Gene:tia1 / 394890 XenbaseID:XB-GENE-1002876 Length:389 Species:Xenopus tropicalis


Alignment Length:107 Identity:29/107 - (27%)
Similarity:51/107 - (47%) Gaps:20/107 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 ATVPLSLEEKQEIDTRS------------VYVGNVDYGASAEELEAHFHGCGTINRVTILCNKAD 133
            ||.|.|  :|::.::.|            |:||::....:.::::|.|...|.|:...::.:...
 Frog    81 ATTPSS--QKKDANSSSVVSTLRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTT 143

  Fly   134 GHPKGFAYIEFGSKEFVETALA-MNETLFRGRQIKVMSKRTN 174
            |..||:.::.|.:|...|.|:| |......||||     |||
 Frog   144 GKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQI-----RTN 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 21/87 (24%)
tia1XP_012814227.2 RRM1_TIA1 8..81 CDD:410027 29/107 (27%)
RRM2_TIA1 104..181 CDD:410030 23/82 (28%)
RRM3_TIAR 214..286 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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