DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and tial1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_005156854.1 Gene:tial1 / 394107 ZFINID:ZDB-GENE-040426-1547 Length:399 Species:Danio rerio


Alignment Length:108 Identity:29/108 - (26%)
Similarity:48/108 - (44%) Gaps:23/108 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 ATVPLSLEEKQEIDTRS---VYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 142
            ||.|.|    |:.||.:   |:||::....:.:::.|.|...|.|:...::.:...|..||:.::
Zfish   101 ATTPSS----QKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFV 161

  Fly   143 EFGSK----------EFVETALA-MNETLFRGRQIKVMSKRTN 174
            .|.:|          :..|.|:. |......||||     |||
Zfish   162 SFYNKLVRLQYRNRVKDAENAIVHMGGQWLGGRQI-----RTN 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 19/88 (22%)
tial1XP_005156854.1 RRM_SF 9..108 CDD:473069 4/10 (40%)
RRM2_TIAR 114..203 CDD:410029 22/91 (24%)
RRM3_TIAR 233..305 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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