DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and msi2b

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_957403.1 Gene:msi2b / 394084 ZFINID:ZDB-GENE-040426-1268 Length:408 Species:Danio rerio


Alignment Length:181 Identity:36/181 - (19%)
Similarity:64/181 - (35%) Gaps:44/181 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKE 148
            |...:.|....|:.::||.:......|:::.:|...|.:....::.:|.....:||.::.|.:::
Zfish    98 PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162

  Fly   149 FVETALAMNETLFRGRQI---KVMSKRTNRP--------GLS-TTNRFARG----------SFRG 191
            .||....::......:.:   |...|....|        ||. |.:.|..|          :..|
Zfish   163 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLSYPNIVATYG 227

  Fly   192 RG--------------------ARVSRACCHSTFRGARRAMGYRGRANYYA 222
            ||                    ..|:.|...:..||:.|  |.|||..|.|
Zfish   228 RGYTGFAPSYSYQFPGFPATAYGPVAAAAAVAAARGSGR--GARGRGGYAA 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 12/77 (16%)
msi2bNP_957403.1 RRM1_MSI2 17..109 CDD:410153 2/10 (20%)
RRM2_MSI 111..184 CDD:240769 11/72 (15%)
Blue background indicates that the domain is not in the aligned region.

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