DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and cstf2

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_009289373.1 Gene:cstf2 / 386806 ZFINID:ZDB-GENE-031118-2 Length:508 Species:Danio rerio


Alignment Length:77 Identity:26/77 - (33%)
Similarity:44/77 - (57%) Gaps:7/77 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 RSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALA----M 156
            |||:|||:.|.|:.|:|:..|...|.:....::.::..|.|||:.:.|:..:   ||||:    :
Zfish    24 RSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQ---ETALSAMRNL 85

  Fly   157 NETLFRGRQIKV 168
            |...|.||.::|
Zfish    86 NGREFSGRALRV 97

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 25/76 (33%)
cstf2XP_009289373.1 RRM_CSTF2_CSTF2T 19..102 CDD:410072 26/77 (34%)
PABP-1234 <26..372 CDD:130689 24/75 (32%)
CSTF2_hinge 120..199 CDD:433869
CSTF_C 464..503 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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