DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and Slirp

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_081234.2 Gene:Slirp / 380773 MGIID:1916394 Length:112 Species:Mus musculus


Alignment Length:118 Identity:31/118 - (26%)
Similarity:55/118 - (46%) Gaps:9/118 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 MAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHP 136
            ||..:..||:.:      :........:|..:.:.|:|.||..||...|.:.|.|:..:|..|..
Mouse     1 MAASAIKGLSAL------RSSTGRPIAFVRKIPWTAAASELREHFAQFGHVRRCTVPFDKETGFH 59

  Fly   137 KGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNR-PGLSTTN--RFAR 186
            :|..:::|.|:|.::.||.....:..|.:|.|.::|... .|..|::  ||.|
Mouse    60 RGMGWVQFSSQEELQNALQQEHHIIDGVKIHVQAQRAKALHGAQTSDEERFLR 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 21/74 (28%)
SlirpNP_081234.2 RRM_SLIRP 21..92 CDD:409688 20/70 (29%)
Blue background indicates that the domain is not in the aligned region.

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