DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and Dazap1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_006241030.1 Gene:Dazap1 / 362836 RGDID:1305280 Length:406 Species:Rattus norvegicus


Alignment Length:128 Identity:25/128 - (19%)
Similarity:55/128 - (42%) Gaps:23/128 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 TRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNET 159
            :..::||.:.:.....||..:|...|.:..|.::.:.....|:||.:|.|..::.|:.|:.|:..
  Rat   112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFH 176

  Fly   160 LFRGRQIKV-----MSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGR 217
            ...|::::|     ...:...||....:::        |:||:.:.          |.|:.|:
  Rat   177 DIMGKKVEVKRAEPRDSKNQAPGQPGASQW--------GSRVAPSA----------ANGWAGQ 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 17/79 (22%)
Dazap1XP_006241030.1 RRM1_DAZAP1 11..92 CDD:409988
RRM2_DAZAP1 111..190 CDD:409765 17/77 (22%)
Blue background indicates that the domain is not in the aligned region.

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