DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and T08B6.9

DIOPT Version :9

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001023366.1 Gene:T08B6.9 / 3564899 WormBaseID:WBGene00020356 Length:531 Species:Caenorhabditis elegans


Alignment Length:226 Identity:49/226 - (21%)
Similarity:75/226 - (33%) Gaps:82/226 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DITLNEDQLLES-------LEETNGEQETEIATEVEEEGSMQIDPELEAIKARVK--------EM 54
            |..:||.:..|:       :|.::.|.:.....:...|.....|.|:|...:..|        .|
 Worm    58 DDVINETKWFEARVIAGNMVEMSSAENKNYKLAKAFIEKISDPDMEVEICGSETKLNSFQYDMYM 122

  Fly    55 EEEAEKIKQMQSEVDKQMAG----GSTTGLATVPLSLEE--KQEIDTRSVY-------------- 99
            :.|:.|.|::   ||.|...    |||.....|.|..::  |.|..|..:|              
 Worm   123 DRESLKYKEV---VDLQAINYRVVGSTKETLVVELRFDQVGKDESKTTFIYTLTTKISFDNKFSR 184

  Fly   100 --VGNVDYGASAEELEAHFHGC----------------------GTINRVTILCNKADGHPKGFA 140
              :..:..|.|.|:     ||.                      |..|.:.         ||.|.
 Worm   185 FVITKIQQGGSCED-----HGIVGFAMLDQETNPESLKTDPSVQGLFNLLI---------PKYFK 235

  Fly   141 YIEFGSKEFVET---ALAMNET---LFRGRQ 165
            :||..||...:.   ||.|:||   :||.|:
 Worm   236 FIEKDSKSIPKAWMHALDMDETDIEVFRARE 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 RRM <43..>172 CDD:223796 41/181 (23%)
RRM_II_PABPN1 97..172 CDD:240994 23/113 (20%)
T08B6.9NP_001023366.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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