Protein Alignment Pabp2 and SPOM_SPAC25G10.01

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001342863.1
• Gene: SPOM_SPAC25G10.01 / 3361412
• PomBaseID: SPAC25G10.01
• Length: 297
• Species: Schizosaccharomyces pombe
• Alignment Length: 219
• Identity: 54/219 - (24%)
• Similarity: 91/219 - (41%)
• Gaps: 26/219 - (11%)

  Fly    15 ESLEETNGE------QETEIATEVE----EEGSMQIDPELEAIKARVKEMEEEAEKIKQM-QSEV 68
            ||.|..|.:      .|||.:.::.    |:.:.:.|.:..:|...|.:::...|.::.| :.||
pombe    11 ESFEIPNADVAGSAVLETETSQDIHQLEIEKDAGETDSDAGSIAMNVHQLDTAGEPLQSMNEDEV 75

  Fly    69 DKQMAGGSTTGL-ATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKA 132
            |   ....:|.| ...|.|..|..|.....::|..:......:||:..|...||:..|.|:....
pombe    76 D---PNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV 137

  Fly   133 DGHPKGFAYIEFGSKEFVETAL-AMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARV 196
            ....:||.::.|.:.|...:|: .:|...|.||.:.|...:.:||...|..:: .|..|.|.:|
pombe   138 TKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKY-MGYDRRRNSR- 200

  Fly   197 SRACCHSTFRGARRAMGYRGRANY 220
                   .|....:..||| |.||
pombe   201 -------DFPSNNKDGGYR-RNNY 216

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	13/63 (21%)
		RRM_II_PABPN1	97..172	CDD:409966	18/75 (24%)
SPOM_SPAC25G10.01	NP_001342863.1	PABP-1234	56..>201	CDD:130689	37/156 (24%)
		RRM	103..174	CDD:214636	17/70 (24%)
		U2AF_lg	207..>283	CDD:273727	6/11 (55%)