Protein Alignment Pabp2 and eIF4B

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001015319.1
• Gene: eIF4B / 3355041
• FlyBaseID: FBgn0020660
• Length: 459
• Species: Drosophila melanogaster
• Alignment Length: 148
• Identity: 32/148 - (21%)
• Similarity: 69/148 - (46%)
• Gaps: 20/148 - (13%)

  Fly    58 AEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSV--------YVGNVDYGASAEELEA 114
            ::||:.:..: |.....|:...:..:|.:....:..|..|:        |:.|:.:.|:.::|..
  Fly    35 SKKIRNLDGD-DSDDGSGTLPLVYQLPTAPRANRIFDDNSIPHKAPFIAYINNLPFDANEDDLYE 98

  Fly   115 HFHGCGTINRVTILCNKAD---GHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKV-MSKRTNR 175
            .|.|   ||.:::...:.|   |..:||.|:|..::|.:...|::.:...:||:|:: :|...::
  Fly    99 FFEG---INLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRIRIELSNENDQ 160

  Fly   176 PGLSTTNRFARGSFRGRG 193
            .....:||    .|.|.|
  Fly   161 QSRQKSNR----RFDGFG 174

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	2/9 (22%)
		RRM_II_PABPN1	97..172	CDD:409966	21/86 (24%)
eIF4B	NP_001015319.1	RRM_eIF4B	78..159	CDD:409836	20/83 (24%)