DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and rbm38

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001103597.1 Gene:rbm38 / 333991 ZFINID:ZDB-GENE-030131-5923 Length:234 Species:Danio rerio


Alignment Length:118 Identity:26/118 - (22%)
Similarity:48/118 - (40%) Gaps:15/118 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 QMAGGSTTGLATVPLSLEEKQEIDT--RSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKAD 133
            |...|:   |.|:..|:::    ||  ..::||.:.|..:...|..:|...|.|:...::.::..
Zfish     5 QFVNGT---LETMYPSIQK----DTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQT 62

  Fly   134 GHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKV------MSKRTNRPGLST 180
            |..:|:.::....|...|.|......:..||:..|      ...|:...|.||
Zfish    63 GKSRGYGFVTMMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPRSPLTGYST 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 15/80 (19%)
rbm38NP_001103597.1 RRM_RBM24_RBM38_like 25..100 CDD:409818 15/74 (20%)
PABP-1234 <37..215 CDD:130689 16/79 (20%)
Blue background indicates that the domain is not in the aligned region.

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