DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and srsf2b

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_955945.2 Gene:srsf2b / 323700 ZFINID:ZDB-GENE-030131-2420 Length:220 Species:Danio rerio


Alignment Length:144 Identity:40/144 - (27%)
Similarity:59/144 - (40%) Gaps:18/144 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 SVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETAL-AMNETL 160
            |:.|.|:.|..|.|.|...|...|.:..|.|..::.....:|||::.|..|...|.|: ||:..:
Zfish    15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAI 79

  Fly   161 FRGRQIKVMSKRTNRP-----------------GLSTTNRFARGSFRGRGARVSRACCHSTFRGA 208
            ..||:::|...|..||                 |..:....||.|...|..|.||:...|..|..
Zfish    80 LDGRELRVQMARYGRPPDSYYGGGGGGRRGSGGGGGSRRHGARRSRSPRRRRRSRSRSRSRSRSR 144

  Fly   209 RRAMGYRGRANYYA 222
            .|:...|.|:..|:
Zfish   145 SRSRYSRSRSRSYS 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 23/75 (31%)
srsf2bNP_955945.2 RRM_SRSF2_SRSF8 16..88 CDD:409751 21/71 (30%)
Blue background indicates that the domain is not in the aligned region.

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