DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and Rbm34

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001014037.1 Gene:Rbm34 / 307956 RGDID:1310161 Length:428 Species:Rattus norvegicus


Alignment Length:186 Identity:55/186 - (29%)
Similarity:86/186 - (46%) Gaps:16/186 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ITLNEDQLLESLEETNGEQETEIATEVEEEGSM---------QIDPELEAIKARVKEMEEEAEKI 61
            :|.|:.:|....:|....:.....:.:..||::         :..|:.::|.|.|...||.| ..
  Rat   192 VTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSINAYVVFKEERA-AA 255

  Fly    62 KQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVT 126
            |.:|.. ..|:|.|..   ..|.|:.|.... |.|||:|||:.|......||.||..||:|..|.
  Rat   256 KALQRN-GAQIAEGFR---IRVDLASETASR-DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVR 315

  Fly   127 ILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTN 182
            |:.|...|..:||.|:.|.:.:.|..||.:|.:...||:::|| :..|:..|...|
  Rat   316 IVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQQN 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 15/70 (21%)
RRM_II_PABPN1 97..172 CDD:409966 29/74 (39%)
Rbm34NP_001014037.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..106
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..152
RRM1_RBM34 183..274 CDD:409828 18/86 (21%)
RRM2_RBM34 286..358 CDD:409829 27/71 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 361..428 3/10 (30%)
Blue background indicates that the domain is not in the aligned region.

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