Protein Alignment Pabp2 and Pabpn1l

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001107251.1
• Gene: Pabpn1l / 307920
• RGDID: 1562761
• Length: 269
• Species: Rattus norvegicus
• Alignment Length: 247
• Identity: 98/247 - (39%)
• Similarity: 135/247 - (54%)
• Gaps: 48/247 - (19%)

  Fly     2 ADEDITLNEDQ--LLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEE-----EAE 59
            :|::...|||.  ||..||..|..:            |...:.|||||:.::..||.     |..
  Rat    47 SDKEAEENEDSSFLLSLLEPENLAK------------SPVYNQELEAIRLKLWTMEHAEVLPEPP 99

  Fly    60 KIKQMQSEVD----KQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCG 120
            .:::..:|.:    :::....|.| ...|.:.:|..|.|.|||||||||||.||.||||:|..||
  Rat   100 SVQRKATEEERAEARELLSPETIG-CFFPGAPKENVEADHRSVYVGNVDYGGSAAELEAYFSPCG 163

  Fly   121 TINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNR-- 183
            .|:||||||:|..|||||:|||||.||..|:.|:.::|:.||||.|||:.||||.||:|:|:|
  Rat   164 EIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGISSTDRGG 228

  Fly   184 ----------FARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN-YYAPY 224
                      |.:||.:    |..|...|...||       ||||: :::||
  Rat   229 LRTHSSSRAAFLQGSLQ----RKPRLRPHGQSRG-------RGRASPWFSPY 269

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	18/71 (25%)
		RRM_II_PABPN1	97..172	CDD:409966	49/74 (66%)
Pabpn1l	NP_001107251.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	26..54		1/6 (17%)
		RRM_SF	140..216	CDD:473069	50/75 (67%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	240..269		11/39 (28%)