Protein Alignment Pabp2 and Pabpn1l

DIOPT Version :9

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001107251.1
• Gene: Pabpn1l / 307920
• RGDID: 1562761
• Length: 269
• Species: Rattus norvegicus
• Alignment Length: 247
• Identity: 98/247 - (39%)
• Similarity: 135/247 - (54%)
• Gaps: 48/247 - (19%)

  Fly     2 ADEDITLNEDQ--LLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEE-----EAE 59
            :|::...|||.  ||..||..|..:            |...:.|||||:.::..||.     |..
  Rat    47 SDKEAEENEDSSFLLSLLEPENLAK------------SPVYNQELEAIRLKLWTMEHAEVLPEPP 99

  Fly    60 KIKQMQSEVD----KQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCG 120
            .:::..:|.:    :::....|.| ...|.:.:|..|.|.|||||||||||.||.||||:|..||
  Rat   100 SVQRKATEEERAEARELLSPETIG-CFFPGAPKENVEADHRSVYVGNVDYGGSAAELEAYFSPCG 163

  Fly   121 TINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNR-- 183
            .|:||||||:|..|||||:|||||.||..|:.|:.::|:.||||.|||:.||||.||:|:|:|
  Rat   164 EIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGISSTDRGG 228

  Fly   184 ----------FARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN-YYAPY 224
                      |.:||.:    |..|...|...||       ||||: :::||
  Rat   229 LRTHSSSRAAFLQGSLQ----RKPRLRPHGQSRG-------RGRASPWFSPY 269

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	RRM	<43..>172	CDD:223796	65/137 (47%)
		RRM_II_PABPN1	97..172	CDD:240994	49/74 (66%)
Pabpn1l	NP_001107251.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	26..54		1/6 (17%)
		RRM	<129..>223	CDD:223796	59/93 (63%)
		RRM_SF	140..216	CDD:302621	50/75 (67%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	240..269		11/39 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	47	1.000	Domainoid score	I11691
eggNOG	1	0.900	-	-		E1_KOG4209
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1412946at2759
OrthoFinder	1	1.000	-	-		FOG0001228
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR23236
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X689
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	9	8.880