Protein Alignment Pabp2 and gar2

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_593531.1
• Gene: gar2 / 2542869
• PomBaseID: SPAC140.02
• Length: 500
• Species: Schizosaccharomyces pombe
• Alignment Length: 285
• Identity: 59/285 - (20%)
• Similarity: 99/285 - (34%)
• Gaps: 83/285 - (29%)

  Fly     2 ADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEK-----I 61
            :..|...:.|...|| .:::...::|..:..|:|...:.:|..|...|::.:..:::.:     :
pombe   204 SSSDSESSSDSSSES-GDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFV 267

  Fly    62 KQMQSEVDKQMAG--------------------GSTTGLATVPLSLEE----------KQEIDTR 96
            .::...||.|..|                    |.:.|...|.....|          .:|||.|
pombe   268 GRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGR 332

  Fly    97 ----------------------------------SVYVGNVDYGASAEELEAHFHGCGTINRVTI 127
                                              :|:|||:.:.|:.::|...|.|||.|..:.:
pombe   333 MVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRL 397

  Fly   128 LCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGR 192
            ..:...|..|||.|:.|...:..:..:.||.....||..: :...|.|.|  ..:|..||.|.||
pombe   398 PTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCR-LDFSTPRTG--GGSRGGRGGFGGR 459

  Fly   193 GARVSRACCHSTFRGARRAMGYRGR 217
            |.          |.|.....|.|||
pombe   460 GG----------FGGRGGFGGGRGR 474

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	10/69 (14%)
		RRM_II_PABPN1	97..172	CDD:409966	21/74 (28%)
gar2	NP_593531.1	PRK13808	<2..64	CDD:172341
		RRM_SF	264..339	CDD:473069	12/74 (16%)
		RRM2_gar2	368..439	CDD:409882	21/71 (30%)