Protein Alignment Pabp2 and SPBC365.04c

DIOPT Version :9

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_596033.1
• Gene: SPBC365.04c / 2540924
• PomBaseID: SPBC365.04c
• Length: 233
• Species: Schizosaccharomyces pombe
• Alignment Length: 219
• Identity: 58/219 - (26%)
• Similarity: 93/219 - (42%)
• Gaps: 33/219 - (15%)

  Fly    11 DQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGG 75
            |:..:||||             .|:...|.:.|||. ||..|...:|..: ||:....||.....
pombe    21 DKKSQSLEE-------------HEKKVQQKNEELEK-KAADKISRDELPE-KQLAQSNDKDKHSV 70

  Fly    76 STTGLATVPLSLEEKQEIDTRSV--YVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKG 138
            |.....|:. |..:|.:.:.|.|  :|||:...:|.|.|:.||...|.:..|.|..:|..|..||
pombe    71 SNPPHKTLK-SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKG 134

  Fly   139 FAYIEF--GSKEFVETALAMNETLFRGRQIKV---------MSKRTNRPGLSTTNRFARGSFRGR 192
            :|::||  ...:.:..||..:.|:::.|:|.:         ...|.|:  :...||..:...|.|
pombe   135 YAFVEFINPKTDVISKALKFHHTIYKERKINIELTAGGGGKTEARMNK--IKEKNRKWKEEMRQR 197

  Fly   193 GARVSRACCHSTFRGARRAMGYRG 216
            .|...:.....  :.||:|:...|
pombe   198 VASEEQQAGEE--KMARKAVADEG 219

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	RRM	<43..>172	CDD:223796	40/141 (28%)
		RRM_II_PABPN1	97..172	CDD:240994	24/87 (28%)
SPBC365.04c	NP_596033.1	RRM	18..229	CDD:223796	58/219 (26%)
		RRM_Nop6	92..167	CDD:240846	24/74 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	2	1.870