DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and pab2

DIOPT Version :9

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_595794.1 Gene:pab2 / 2539733 PomBaseID:SPBC16E9.12c Length:166 Species:Schizosaccharomyces pombe


Alignment Length:184 Identity:85/184 - (46%)
Similarity:107/184 - (58%) Gaps:28/184 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 DPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDY 105
            :.||..:|.||.|||.||.|::.||.::|.:     |..|.      .:|:.||.:|||||||||
pombe    11 EKELLEMKERVAEMEAEAAKLRAMQEQLDNE-----TEALR------NDKESIDAQSVYVGNVDY 64

  Fly   106 GASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMS 170
            ..:.|||::||..||::|||||||:|..|||||||||||.....|..||.:|.::...|.:||..
pombe    65 SVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTP 129

  Fly   171 KRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224
            ||||.||:|......||..||||            ||     ||||||..:|||
pombe   130 KRTNVPGMSRGRGRGRGRGRGRG------------RG-----GYRGRARGFAPY 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 RRM <43..>172 CDD:223796 61/128 (48%)
RRM_II_PABPN1 97..172 CDD:240994 42/74 (57%)
pab2NP_595794.1 RRM 1..>138 CDD:223796 67/137 (49%)
bZIP <8..47 CDD:304365 16/46 (35%)
RRM_II_PABPs 56..128 CDD:240752 41/71 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 91 1.000 Domainoid score I2055
eggNOG 1 0.900 - - E1_KOG4209
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 149 1.000 Inparanoid score I1316
OMA 1 1.010 - - QHG53866
OrthoFinder 1 1.000 - - FOG0001228
OrthoInspector 1 1.000 - - oto102146
orthoMCL 1 0.900 - - OOG6_101686
Panther 1 1.100 - - LDO PTHR23236
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4120
SonicParanoid 1 1.000 - - X689
TreeFam 1 0.960 - -
1312.860

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