DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pabp2 and Tia1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_035715.1 Gene:Tia1 / 21841 MGIID:107914 Length:386 Species:Mus musculus


Alignment Length:109 Identity:32/109 - (29%)
Similarity:49/109 - (44%) Gaps:24/109 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 ATVPLSLEEKQEIDTRS--------------VYVGNVDYGASAEELEAHFHGCGTINRVTILCNK 131
            ||.|.|    |:.||.|              |:||::....:.|:::|.|...|.|:...::.:.
Mouse    81 ATTPSS----QKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM 141

  Fly   132 ADGHPKGFAYIEFGSKEFVETAL-AMNETLFRGRQIKVMSKRTN 174
            |.|..||:.::.|.:|...|.|: .|......||||     |||
Mouse   142 ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI-----RTN 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 22/89 (25%)
Tia1NP_035715.1 RRM1_TIA1 8..81 CDD:410027 32/109 (29%)
RRM2_TIA1 104..181 CDD:410030 24/82 (29%)
RRM3_TIAR 214..286 CDD:241064
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..376
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.