Protein Alignment Pabp2 and sqd-1

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 130
• Identity: 36/130 - (27%)
• Similarity: 62/130 - (47%)
• Gaps: 20/130 - (15%)

  Fly    54 MEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHG 118
            ||....||....||..|: .|.||.|       .|:|:      ::||.:....:.|:|.:||..
 Worm     1 MEATDNKINGNASETIKE-NGHSTKG-------NEDKK------IFVGGISPEVNNEDLSSHFTQ 51

  Fly   119 CGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNR 183
            .|.:.:..:..::.:|..:|||::||.:.|..:.|||..|...:|:.::|      :|..|..|:
 Worm    52 YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEV------KPAKSRENK 110

  Fly   184  183
             Worm   111  110

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	5/13 (38%)
		RRM_II_PABPN1	97..172	CDD:409966	20/74 (27%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	20/85 (24%)
		RRM_SF	111..185	CDD:473069	36/130 (28%)