Protein Alignment Pabp2 and sgnh-1

DIOPT Version :9

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_500666.2
• Gene: sgnh-1 / 177260
• WormBaseID: WBGene00020354
• Length: 177
• Species: Caenorhabditis elegans
• Alignment Length: 180
• Identity: 65/180 - (36%)
• Similarity: 93/180 - (51%)
• Gaps: 30/180 - (16%)

  Fly    56 EEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCG 120
            ||.|.:||..|...|.||.           :.||:::.|.|||||||||:.::..|:|.||..||
 Worm    17 EEMELLKQALSASKKYMAP-----------TAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCG 70

  Fly   121 TINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTT---- 181
            .:.||||..:|..|:.|.||::||...|.|:.||.::.|:||.|:|.|..||||:||:..|
 Worm    71 KVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPGMGRTATAQ 135

  Fly   182 --NRFARGSFRGRGAR-----VSRACCHSTFRGARRAMGYRGRANYYAPY 224
              ..||:.|....|:.     |.....::...|:        |:..:|||
 Worm   136 KPAHFAKSSHGKPGSHQGVTVVKYVYVNAPINGS--------RSKRFAPY 177

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	RRM	<43..>172	CDD:223796	48/115 (42%)
		RRM_II_PABPN1	97..172	CDD:240994	35/74 (47%)
sgnh-1	NP_500666.2	RRM_II_PABPs	47..119	CDD:240752	34/71 (48%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4209
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1412946at2759
OrthoFinder	1	1.000	-	-		FOG0001228
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR23236
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X689
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	7	6.880