Protein Alignment Pabp2 and EEED8.4

DIOPT Version :9

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_495022.2
• Gene: EEED8.4 / 173921
• WormBaseID: WBGene00017135
• Length: 191
• Species: Caenorhabditis elegans
• Alignment Length: 187
• Identity: 77/187 - (41%)
• Similarity: 104/187 - (55%)
• Gaps: 25/187 - (13%)

  Fly    53 EMEEEAEK--IKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAH 115
            |||.|||.  ::|:|:::.|.:...     |.||.:.||::.||.:||::||||:.::.||:|.|
 Worm    15 EMEIEAESAILQQIQNKMAKHLESA-----AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEH 74

  Fly   116 FHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLST 180
            |.|||.|.:.||..:|.....|.||||||.....:|.||.||.:|||.|.|.|.:||||.||:..
 Worm    75 FKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGH 139

  Fly   181 TNR-FARGSF-RGRGAR-----------VSRACCHSTFRGARRAMGYRGRANYYAPY 224
            ..| .:||:| |||||.           |.....:...||.|   |.|||.  :.||
 Worm   140 GVRGSSRGTFGRGRGAARGAPGRQQTVVVKYVYVNGPNRGGR---GGRGRR--FNPY 191

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	RRM	<43..>172	CDD:223796	52/120 (43%)
		RRM_II_PABPN1	97..172	CDD:240994	36/74 (49%)
EEED8.4	NP_495022.2	RRM	<2..>127	CDD:223796	51/116 (44%)
		RRM_II_PABPs	56..128	CDD:240752	35/71 (49%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4209
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG53866
OrthoDB	1	1.010	-	-		D1412946at2759
OrthoFinder	1	1.000	-	-		FOG0001228
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR23236
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X689
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	7	6.930