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Protein Alignment Pabp2 and SC35
DIOPT Version :10
| Sequence 1: | NP_476902.1 |
Gene: | Pabp2 / 35788 |
FlyBaseID: | FBgn0005648 |
Length: | 224 |
Species: | Drosophila melanogaster |
| Sequence 2: | XP_061513963.1 |
Gene: | SC35 / 1279150 |
VectorBaseID: | AGAMI1_006283 |
Length: | 167 |
Species: | Anopheles gambiae |
| Alignment Length: | 112 |
Identity: | 35/112 - (31%) |
| Similarity: | 55/112 - (49%) |
Gaps: | 12/112 - (10%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 97 SVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETAL-AMNETL 160
|:.|.|:.|..:.::|...|..||.:..:.|..::.....:|||::.|..|...|.|| ||:..:
Mosquito 16 SLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAEDALDAMDGRM 80
Fly 161 FRGRQIKVMSKRTNRPGLSTT-----NRF---ARGSFRGRGARVSRA 199
..||:::|...|..|| |: ||: .||..|.|..|.||:
Mosquito 81 LDGRELRVQMARYGRP---TSPQRRGNRYNGRERGRSRERHRRRSRS 124
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| Pabp2 | NP_476902.1 |
DNA_pol_phi |
<3..68 |
CDD:461488 |
|
| RRM_II_PABPN1 |
97..172 |
CDD:409966 |
22/75 (29%) |
| SC35 | XP_061513963.1 |
None |
|
Blue background indicates that the domain is not in
the aligned region.
|
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