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Protein Alignment Pabp2 and Caper
DIOPT Version :10
| Sequence 1: | NP_476902.1 |
Gene: | Pabp2 / 35788 |
FlyBaseID: | FBgn0005648 |
Length: | 224 |
Species: | Drosophila melanogaster |
| Sequence 2: | XP_317010.4 |
Gene: | Caper / 1277542 |
VectorBaseID: | AGAMI1_007869 |
Length: | 595 |
Species: | Anopheles gambiae |
| Alignment Length: | 113 |
Identity: | 34/113 - (30%) |
| Similarity: | 48/113 - (42%) |
Gaps: | 8/113 - (7%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 74 GGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTIL-CNKADGHPK 137
|||.......||....:::.|.|:|:...:.....|.:||..|...|.:..|.:: |||.... |
Mosquito 218 GGSGYYRDRSPLEEMSQEDRDARTVFCMQLSQRIHARDLEEFFSSVGKVRDVRLITCNKTKRF-K 281
Fly 138 GFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFA 185
|.|||||...|.|..||.::.....|..|.|...:..: ||.|
Mosquito 282 GIAYIEFKDPESVALALGLSGQKLLGIPISVQHTQAEK------NRMA 323
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| Pabp2 | NP_476902.1 |
DNA_pol_phi |
<3..68 |
CDD:461488 |
|
| RRM_II_PABPN1 |
97..172 |
CDD:409966 |
24/75 (32%) |
| Caper | XP_317010.4 |
None |
|
Blue background indicates that the domain is not in
the aligned region.
|
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