DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and MSI2

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_005257072.1 Gene:MSI2 / 124540 HGNCID:18585 Length:346 Species:Homo sapiens


Alignment Length:145 Identity:27/145 - (18%)
Similarity:53/145 - (36%) Gaps:20/145 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKE 148
            |...:.|....|:.::||.:......|:::.:|...|.:....::.:|.....:||.::.|.:::
Human    98 PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162

  Fly   149 FVETALAMNETLFRGRQIKVMSKRTNR----PGLSTTNRFARGSFRGRGARVSRACCHSTFRGAR 209
            .||....::......:.::....:...    ||       .||..||         ...|.....
Human   163 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG-------TRGRARG---------LPYTMDAFM 211

  Fly   210 RAMGYRGRANYYAPY 224
            ..||..|..|:.|.|
Human   212 LGMGMLGYPNFVATY 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 11/74 (15%)
MSI2XP_005257072.1 RRM1_MSI2 17..109 CDD:410153 2/10 (20%)
RRM2_MSI 111..184 CDD:240769 11/72 (15%)
Blue background indicates that the domain is not in the aligned region.

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