DRSC/TRiP Functional Genomics Resources

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Protein Alignment Socs44A and cish

DIOPT Version :9

Sequence 1:NP_523659.1 Gene:Socs44A / 35786 FlyBaseID:FBgn0033266 Length:342 Species:Drosophila melanogaster
Sequence 2:NP_001070085.1 Gene:cish / 767678 ZFINID:ZDB-GENE-050907-1 Length:212 Species:Danio rerio


Alignment Length:210 Identity:56/210 - (26%)
Similarity:84/210 - (40%) Gaps:37/210 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 PEPTLPFTHDYLRFIRKKWLEREDAHSPNQIMYKACSEMLNQVWYWGEISRRDSQRQLSDKPTGS 210
            |...|||:..  |.|.:.:|..|||....:.:....|.:....||||.||..::...|.....|:
Zfish    10 PRALLPFSSP--RRIDEPFLTIEDASKDYRALTLNFSYLDASGWYWGGISASEAHSVLKGASEGT 72

  Fly   211 FLVRDSETSGSQFTLSFRIVNVTLHYRLEYR----------------DNF-------WHFEELKY 252
            ||:|||.......|||.:.|....:.|:|||                .:|       .|:...|.
Zfish    73 FLIRDSSHPDYMLTLSVKTVRGPTNVRIEYRQCRFSLDSSSPARSHLQSFPDVHSLVQHYVGSKS 137

  Fly   253 ESIVEMIEDILHRCTNDNFVCFVKVPNEMQPPFPVILKYPLSRYSNMPKLQDLCRRVLQRQMSRE 317
            |...|.:|:..|..::....|.|.:.          ||.|:......|.|:.|.|.|:.:..|..
Zfish   138 EKNEEKMEEAHHVISSAPKECSVLLK----------LKKPIHCPQGFPSLKHLTRLVINKHTSST 192

  Fly   318 QLAQLPVPAQMLEYL 332
            ::  ||:|..:|.||
Zfish   193 EM--LPLPNPLLYYL 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Socs44ANP_523659.1 SH2_SOCS_family 188..266 CDD:198178 28/100 (28%)
SOCS 293..333 CDD:295349 12/40 (30%)
cishNP_001070085.1 SH2_CIS 46..133 CDD:198285 23/86 (27%)
SOCS 175..212 CDD:295349 12/33 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575800
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4566
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 67 1.000 Inparanoid score I5344
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.790

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