DRSC/TRiP Functional Genomics Resources

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Protein Alignment Socs44A and Tnp2

DIOPT Version :9

Sequence 1:NP_523659.1 Gene:Socs44A / 35786 FlyBaseID:FBgn0033266 Length:342 Species:Drosophila melanogaster
Sequence 2:NP_058753.2 Gene:Tnp2 / 24840 RGDID:3885 Length:114 Species:Rattus norvegicus


Alignment Length:29 Identity:10/29 - (34%)
Similarity:13/29 - (44%) Gaps:3/29 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 STSGSQNNNNEVCVLEAADSSMASCSNGG 86
            |:|..|::.|..|   |......|||..|
  Rat    17 SSSRPQSHTNNQC---ACSHHCRSCSQAG 42

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Socs44ANP_523659.1 SH2_SOCS_family 188..266 CDD:198178
SOCS 293..333 CDD:295349
Tnp2NP_058753.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114 10/29 (34%)
TP2 1..110 CDD:279579 10/29 (34%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:10961985 87..95
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4566
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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