DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup50 and AT4G11790

DIOPT Version :10

Sequence 1:NP_610355.1 Gene:Nup50 / 35784 FlyBaseID:FBgn0033264 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_567381.1 Gene:AT4G11790 / 826785 AraportID:AT4G11790 Length:443 Species:Arabidopsis thaliana


Alignment Length:475 Identity:101/475 - (21%)
Similarity:185/475 - (38%) Gaps:104/475 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 AKESTSTVDGAKPTTSIFGNISAAKKESSEAKTSSSSTSLTSTMETSEY-RESVADLNRSVIKFL 210
            ::.:.|....|||...||    ...:::......||.||.:...:.:|. |:.|..||...:.::
plant    10 SESNDSPFKNAKPVEGIF----FGTQKNVVPMQQSSVTSASLDKQRAELARKHVRALNNQFVSWV 70

  Fly   211 QDQMGKSPYCILTPVFKNYDEHLKDLQDEESARTNSTKSKTAQARSQEPVAKVSRASSPPKAATT 275
            |.|:...|..:......:|..|..::.::.....:..|....:..:..|.::             
plant    71 QLQLKNHPDELWEDGMNDYITHASNILEKFKDVVSWLKENKGKGENLSPESR------------- 122

  Fly   276 FTFGKPSAPIGASVSPLAKKPNCTITSGGTTTTTAT----PLVSFGSTASFTAPVPSSSSIFS-- 334
                      ||....:|:..|..:.|.......|:    .:.|...::.|::   |.|..||  
plant   123 ----------GAENKLVAEVKNTNVKSFSNNIPFASNNQPGIFSNNQSSDFSS---SQSGFFSSQ 174

  Fly   335 ---LTAKPTGEAKSDDTPKSSIFSFGAKDTTTKKDEPN-FSAPKTNGFS-----------FGLKS 384
               .::.|:|...:..|...|...||    |||..:|: ||..:....|           .|:.|
plant   175 SGAFSSSPSGLISNSQTGSFSSGQFG----TTKSSQPSLFSGSQAGAISNSQPGTFSSSHSGITS 235

  Fly   385 NNDDKPSTSLFAG--FGKA------------PGGAGDGAKGFSFTNSATPFSLGNIHPPAAAAAP 435
            |:    .|..|:.  ||:.            .|........|.|:||.:||:  :..||.:..|.
plant   236 NS----QTGSFSSGQFGQTKSSQPSLLSGSQAGAISSNQPSFQFSNSQSPFT--SAVPPVSIPAK 294

  Fly   436 AE--------EEKEEDTPPKVEFKQVVEDDAIYSKRCKVFIKK----DKDFGDRGVGTLYL---- 484
            .:        :|:.:.:.|.|:..:......::..:||:::|.    ||.:.|:|.|.||:    
plant   295 QDHSDDADGGDEQSQPSSPSVKKTEEKGITVVHEVKCKLYVKSSDPADKGWKDKGTGNLYIKCKE 359

  Fly   485 ---KPVKDSEKIQLLVRADTNLGNILVNLILSKGIPCQRMGKNNVLMVCVPTPEDSKAT----SL 542
               |..|:| |..:|||.|  :|.:|:|.:|..|:  :...:.|.|:....:.:||...    :.
plant   360 GVDKGTKES-KPTILVRND--VGKLLLNALLYAGM--KTSPQKNALVAIFHSSDDSNENVTPRTF 419

  Fly   543 LLRVKTGDEADDLLEKIKEH 562
            |:|.|..:..|:|...|:|:
plant   420 LIRTKNAEARDNLATAIQEY 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup50NP_610355.1 NUP50 3..80 CDD:462629
RanBD_NUP50 453..563 CDD:269991 34/125 (27%)
AT4G11790NP_567381.1 RanBD_NUP50 318..440 CDD:269991 34/127 (27%)
Blue background indicates that the domain is not in the aligned region.

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