DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cul4 and CUL1

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:NP_001031575.1 Gene:CUL1 / 825648 AraportID:AT4G02570 Length:738 Species:Arabidopsis thaliana


Alignment Length:746 Identity:258/746 - (34%)
Similarity:419/746 - (56%) Gaps:60/746 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 NYSKDTYVKLEEAVIAIQLSKPIKYSLEE---LYQAVVNMCS----HKMDAQLYAKLKELTEQHV 173
            :|.:....||:.  |...|::| .:..|:   ||..:.|||:    |....|||.|.:|..|:::
plant    13 DYMQTGITKLKR--ILEGLNEP-AFDSEQYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYI 74

  Fly   174 KRNI--KLKELTGGSMDKLILLEKINHWWLSFCQQMIMIR---SIFLYMDRTYVLQNSTVHSIWD 233
            ...:  .|:|    ..|:.:|.|....|    ....:|:|   ..|.|:||.::.:.| :..:.:
plant    75 NSTVLPALRE----KHDEFMLRELFKRW----SNHKVMVRWLSRFFYYLDRYFIARRS-LPPLNE 130

  Fly   234 MGLDLFR--IHFAQNSVVQKRTVDGLLTLIEKERQGSTVDRGLLKSLVRMLCD-----LQIYTSS 291
            :||..||  ::...:|.|::    .::.|::|||:|..:||.|||:::.:..:     ::.|...
plant   131 VGLTCFRDLVYNELHSKVKQ----AVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEED 191

  Fly   292 FEEKFLDATNQLYKAESQRKMQELEVPEYLQHVNKRLAEENERLRHYLDSSTKHPLIYNVEKELL 356
            ||...|..|:..|..::...:||...|:|:....:.|.:|.||:.|||.||::..|:..|:.|||
plant   192 FESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHSSSEPKLVEKVQHELL 256

  Fly   357 AEHLTSILQK---GLDSLLEDNRLSDLTLLYGLLSRVKNGTSELCGNFNGFIKKKGRTIVIDPE- 417
            ....:.:|:|   |..:||.|:::.||:.:|.|..::..|...:...|...:..:|..:|...| 
plant   257 VVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAED 321

  Fly   418 ------------KDKSMVQDLLDFKDKMDVIVRTCFEHNEKFTNSLREAFEFFINQ--RANKPAE 468
                        :::.:::.:::..||..|.|..||:::..|..:|:||||.|.|:  ..:..||
plant   322 TATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSAE 386

  Fly   469 LIAKYVDMKL-RSGNKGTTDEELEKTLDKIMVLFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDS 532
            |:|.:.|..| :.|::..:||.:|.||:|::.|..:|..||:|..||:|.||:|||..:||:.|.
plant   387 LLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDH 451

  Fly   533 EKSMLSKLKQECGGGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHNLDLCVSILTMGYWPT 597
            |:|:|:||||:|||.||||:|||..|:.|:|:...:|..:..||......:||.|::||.|:||:
plant   452 ERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPS 516

  Fly   598 YAPTEVTMPPQFINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRAQFDAGPKELLVSLFQALVLL 662
            |...::.:|.:.|...::|..||..|...|||.|..:||.|.:..:||....||:||.:||.|||
plant   517 YKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLL 581

  Fly   663 LFNDKPVLSYEEILAATLIEDGELRRTLQSLACGRARVITKTPKGREILDGDQFDFNNEFTNKLF 727
            |||....|||.||||...:...:|.|.|.||:|.:.:::.|.|..:.:...|.|:||::||:::.
plant   582 LFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMR 646

  Fly   728 RIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLITELFNQLTFPVKP- 791
            |||   |.:...:|.:|..|: |.:||:|.||||||||||.||.|.|..|::|...||:...|| 
plant   647 RIK---IPLPPVDERKKVVED-VDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPD 707

  Fly   792 -ADLKKRIESLIDRDYMERDKDNQNQYNYVA 821
             ..:|||:|.||.|||:||||:|.|.:.|:|
plant   708 IKAIKKRMEDLITRDYLERDKENPNMFRYLA 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 207/634 (33%)
CULLIN 503..644 CDD:214545 60/140 (43%)
Cullin_Nedd8 750..815 CDD:214883 38/66 (58%)
CUL1NP_001031575.1 Cullin 12..641 CDD:395716 208/643 (32%)
Cullin_Nedd8 668..729 CDD:402267 35/60 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 1 1.000 - - FOG0000491
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.790

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