DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Cul4 and AT3G46910

DIOPT Version :9

Sequence 1:	NP_001163084.1	Gene:	Cul4 / 35780	FlyBaseID:	FBgn0033260	Length:	821	Species:	Drosophila melanogaster
Sequence 2:	NP_190275.1	Gene:	AT3G46910 / 823844	AraportID:	AT3G46910	Length:	247	Species:	Arabidopsis thaliana

Alignment Length:	241	Identity:	60/241 - (24%)
Similarity:	105/241 - (43%)	Gaps:	34/241 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly   110 KPTLPDN-------YSKDTYVKLEEAVIAIQLSKPIKYSLEELYQAV-VNMCSHKMDAQLYAKLK 166
            ||.:|..       |.:|.:..|:.|:.||.|.:|..::...|:.|| .:.|.......||..:.
plant    11 KPIIPHTPKPDSRIYVEDAWTMLKPAIRAIFLDEPQDFACSGLFNAVNKSWCEKSSGEALYKLIL 75

  Fly   167 ELTEQHVKRNIKLKELTGGSMDKLILLEKINHWWLSFCQQMIMIRSIFLYMDRTYVLQNSTV--H 229
            |..|.::...|:..| :....|..:.|..:...||.|.:::..:.||       ...:..||  |
plant    76 EECEIYISAAIQSLE-SQCDTDPSLFLSLLEKCWLDFRRKLQFLCSI-------AGGEGQTVGPH 132

  Fly   230 SIWDMGLDLFRIHFAQNSVVQKRTVDGLLTLIEKERQGSTVDRGLLKSLVRMLCDL--------- 285
            |:||:|.:|...|......|:.:.:..:|.||..:|...:||...||:..|.:..:
plant   133 SVWDLGSELSPKHLFSAQKVRDKLLSIILQLIRDQRSFMSVDMTQLKNTTRPVMSVHMTQLNNLR 197

  Fly   286 ------QIYTSSFEEK-FLDATNQLYKAESQRKMQELEVPEYLQHV 324
                  .:|.|.|.:| |:|...:.|.||:.:..::.::|.||:.|
plant   198 GLFYGQSLYKSPFFKKPFIDCAVEFYSAEAMQFKEQSDIPLYLKRV 243

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Cul4	NP_001163084.1	Cullin	124..721	CDD:279260	55/220 (25%)
		CULLIN	503..644	CDD:214545
		Cullin_Nedd8	750..815	CDD:214883
AT3G46910	NP_190275.1	Cullin	33..>244	CDD:279260	55/219 (25%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5647
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1040292at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820