DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul4 and cul1

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:NP_001039255.1 Gene:cul1 / 734121 XenbaseID:XB-GENE-945766 Length:776 Species:Xenopus tropicalis


Alignment Length:808 Identity:242/808 - (29%)
Similarity:389/808 - (48%) Gaps:106/808 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 MGAIHNSKPGDVKKIVIKNFKD--KPTLPDNYSKDTYVKLEEAVIAIQLSKPIKYSLEELYQAVV 150
            |.:..:..|..:|:|.:....|  :..:...|::.:..|             .:|.  |||..|.
 Frog     1 MSSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAK-------------SRYM--ELYTHVY 50

  Fly   151 NMCS--HK-------------------------MDAQLYAKLKELTEQHVKRNIKLKELTGGSMD 188
            |.|:  |:                         :..:||.:|||..:.::...:|..|   ..||
 Frog    51 NYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGE---DLMD 112

  Fly   189 KLILLEKINHWWLSFCQQMIMIRSIFLYMDRTYVLQ-----NSTVHSIWDMGLDLFRIHFAQNSV 248
            :.: |:.....|..:.....::..|..|::|.:|.:     ...::.|:.:.|..:|....:  .
 Frog   113 ESV-LKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFK--P 174

  Fly   249 VQKRTVDGLLTLIEKERQGSTVDRGLLKSLVRMLCD--------------LQIYTSSFEEKFLDA 299
            :.|:..:.:|.||||||.|.|::..|:..:|:...:              |.:|..|||.:||..
 Frog   175 LNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 239

  Fly   300 TNQLYKAESQRKMQELEVPEYLQHVNKRLAEENERLRHYLDSSTKHPLIYNVEKELLAEHLTSIL 364
            |.:.|..||...:|:..|.||::....||.||..|::.||..||:..|....|:.|:.:|| .|.
 Frog   240 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHL-EIF 303

  Fly   365 QKGLDSLLEDNRLSDLTLLYGLLSRVKNGTSELCGNFN--------GFIKKKGRTIVIDPEKDKS 421
            .....:||:.::..||..:|.|:||:::|..||.....        ..|:|.|.....||   |.
 Frog   304 HTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAAQNDP---KM 365

  Fly   422 MVQDLLDFKDKMDVIVRTCFEHNEKFTNSLREAFEFFIN--------QRANKPAELIAKYVDMKL 478
            .||.:||...|.:.:|.:.|.::..|..:|.:|...|||        |.::|..||:|:|.|..|
 Frog   366 YVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLL 430

  Fly   479 RSGNKGTTDEELEKTLDKIMVLFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDSEKSMLSKLKQE 543
            :..:|...:.|||.||:::||:|::|..||||:.||.|.|||||:...|||.|:|.||:|||||.
 Frog   431 KKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQA 495

  Fly   544 CGGGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHNLDLCVSILTMGYWPTYAPTEVTMPPQ 608
            ||..:||||:.||:|:.:|:|:|..|:.| |:|:..: :||..:.:|:.|.||........:|.:
 Frog   496 CGFEYTSKLQRMFQDIGVSKDLNEQFKKH-LTNSEPL-DLDFSIQVLSSGSWPFQQFCTFALPSE 558

  Fly   609 FINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRAQFDAGPKELLVSLFQALVLLLFNDKPVLSYE 673
            .....|.|..||..:||||||.|...|....|..........|..|.||..:||.:|.:...:.:
 Frog   559 LERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQ 623

  Fly   674 EILAATLIEDGELRRTLQSLACGRARVITKTPKGREILDGDQFDFNNE--------FTNKLFRIK 730
            ::..:|.|:...|.:.||.|...:..|:..     |..:.|..|...:        :.||..|:.
 Frog   624 QLTDSTQIKMDILVQVLQILLKSKLLVLED-----ENANVDDVDLKPDILIKLYLGYKNKKLRVN 683

  Fly   731 INQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLITELFNQLTFPVKP--AD 793
            ||.....|..:||:.|.:.:.:||:..|.|||||||||||.|.|..|:.|:..||:...||  ..
 Frog   684 INVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPV 748

  Fly   794 LKKRIESLIDRDYMERDKDNQNQYNYVA 821
            :||.|:.||:::|:||....::.|:|:|
 Frog   749 IKKCIDILIEKEYLERVDGEKDTYSYLA 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 194/658 (29%)
CULLIN 503..644 CDD:214545 61/140 (44%)
Cullin_Nedd8 750..815 CDD:214883 30/66 (45%)
cul1NP_001039255.1 Cullin 21..662 CDD:366357 195/672 (29%)
Cullin_Nedd8 703..770 CDD:214883 30/66 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.930

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