DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul4 and Cul5

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:XP_006243152.1 Gene:Cul5 / 64624 RGDID:621742 Length:828 Species:Rattus norvegicus


Alignment Length:830 Identity:215/830 - (25%)
Similarity:372/830 - (44%) Gaps:168/830 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 TSNLLNRMGAIHNSKPGD-VKKIVIKNFKDKPTLPDNYSKDTYVKLEEAVIAIQL-----SKPIK 139
            |||||...|::......| ::.||:|..:.     ::.:|..:..|...|.|:.|     |..|.
  Rat    78 TSNLLKNKGSLQFEDKWDFMRPIVLKLLRQ-----ESVTKQQWFDLFSDVHAVCLWDDKGSSKIH 137

  Fly   140 YSLEE-----LYQAVVNMCSHKMDAQLYAKLKELTEQHVKRNIKLKELTGGSMDKLILLEKINHW 199
            .:|:|     :.||...:.||:.|..|.                          |..::|     
  Rat   138 QALKEDILEFIKQAQARVLSHQDDTALL--------------------------KAYIVE----- 171

  Fly   200 WLSFCQQMIMIRSIFLYMDRTYV----------LQNSTVHSIWDMGLDLFRIHFAQNSVVQKRTV 254
            |..|..|..::...|..::.|.:          :::|.|..:.   ||.:......|  ::.|..
  Rat   172 WRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLM---LDTWNESIFSN--IKNRLQ 231

  Fly   255 DGLLTLIEKERQGSTVDR----GLLKSLVRMLCD-----LQIYTSSFEEKFLDATNQLYKAESQR 310
            |..:.|:..||.|...|.    |:.:|.|. ||.     ||||..:||:.:||:|.:.|:.::..
  Rat   232 DSAMKLVHAERLGEAFDSQLVIGVRESYVN-LCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPS 295

  Fly   311 KMQELEVPEYLQHVNKRLAEENERLRHYLDSSTKHPLIYNVEKELLAEHLTSILQKGLDSLLEDN 375
            .:|:..|..|::               ||.....:.|:.:.::.:|||         ...:::.|
  Rat   296 YLQQNGVQNYMK---------------YLMECCVNALVTSFKETILAE---------CQGMIKRN 336

  Fly   376 RLSDLTLLYGLLSRVKNGTSELCGNFNGFIKKKG--------RTIVIDPEKDKSMVQDLLDFKDK 432
            ....|.|::.|:.:|..|...:..:....|...|        .||..|.||   .|:.||...::
  Rat   337 ETEKLHLMFSLMDKVPGGIEPMLKDLEEHIISAGLADMVAAAETITTDSEK---YVEQLLTLFNR 398

  Fly   433 MDVIVRTCFEHNEKFTNSLREAFEFFIN--------------------QRANKPAELIAKYVDMK 477
            ...:|:..|:.:.:|..:..:|::..:|                    |..:|..||:|.|.||.
  Rat   399 FSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFKLELPLKQKGVGLKTQPESKCPELLANYCDML 463

  Fly   478 LRSG--NKGTTDEELEKTLDKIMVLFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDSEKSMLSKL 540
            ||..  :|..|.||:|..|.:::::.:::..||||..::|..|.:||::..||..:.|::|:..|
  Rat   464 LRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 528

  Fly   541 KQECG--GGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHNLDLCVSILTMGYWPTYA---- 599
            : |.|  ..:.:||..||:|:::|.|:|.||:....:|...:....:.:.||..|.|...:    
  Rat   529 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVF 592

  Fly   600 ---PTEVTMPPQFINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRAQFDAGPKELLVSLFQALVL 661
               |||:    :.:.|:  ..:||.:.||||||.|...:.|.::..:.:.|..:|.|:.||..||
  Rat   593 VSLPTEL----EDLIPE--VEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVL 651

  Fly   662 LLFNDKP--VLSYEEILAATLIEDGELRRTLQSLACG---RARVITKTPK---GREILDGDQFDF 718
            ..:|.:|  .:|:|.:..||.:.|.||||||.||...   :.:|:...|:   .::..:|..|..
  Rat   652 FAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSV 716

  Fly   719 NNEFT-------NKLFRIKINQI-QMKETNEEQKATE-ERVFQDRQYQIDAAIVRIMKMRKTLSH 774
            |.:|:       .|  |.|||.| :::.|.|..:..| |.:.|.|..:...||::||||||.:|:
  Rat   717 NQDFSLIKNAKVQK--RGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISN 779

  Fly   775 NLLITEL---FNQLTFPVKPADLKKRIESLIDRDYMERDKDNQNQYNYVA 821
            ..|.|||   ...:..|.|.. :|::||.||:..|:.||:.:.|.:.|:|
  Rat   780 AQLQTELVEILKNMFLPQKKM-IKEQIEWLIEHKYIRRDEADINTFIYMA 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 165/672 (25%)
CULLIN 503..644 CDD:214545 44/149 (30%)
Cullin_Nedd8 750..815 CDD:214883 25/67 (37%)
Cul5XP_006243152.1 Cullin 95..719 CDD:279260 170/699 (24%)
CULLIN 491..634 CDD:214545 44/149 (30%)
Cullin_Nedd8 761..820 CDD:287520 23/59 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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