DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cul4 and cul4b

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:NP_001116316.1 Gene:cul4b / 560313 ZFINID:ZDB-GENE-041008-208 Length:864 Species:Danio rerio


Alignment Length:845 Identity:507/845 - (60%)
Similarity:625/845 - (73%) Gaps:35/845 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSAAKKYKPMDTTELHENTENIAACLKKAENVAPTAAAASS----------------------VG 43
            ::::||.|...:.:  |:.::|::..|...|.:.|.:.:||                      :|
Zfish    31 LTSSKKRKINSSDK--EDIDSISSSPKAICNSSSTTSCSSSSQQQQQQQHIQKKLRFEDPLDLIG 93

  Fly    44 RSAFAAQNMNSASTNGERLPNFSKLG--GSHGEIRTASTTSNLLNRMGAIHNSKPGDVKKIVIKN 106
            .....|:...:.|.:..:..|....|  |.|....|.|..|      ....|||||..||:||||
Zfish    94 LDVKMAEESCNPSESCSKARNVFLPGGVGHHANGLTKSAGS------ATFSNSKPGAAKKLVIKN 152

  Fly   107 FKDKPTLPDNYSKDTYVKLEEAVIAIQLSKPIKYSLEELYQAVVNMCSHKMDAQLYAKLKELTEQ 171
            ||:||.||:||:.:|:.||:|||.|||.|..|||:||||||||.|:||||:.|:||.:|:.:.|.
Zfish   153 FKEKPKLPENYTNETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSHKISAKLYKQLRVVCED 217

  Fly   172 HVKRNIKLKELTGGSMDKLILLEKINHWWLSFCQQMIMIRSIFLYMDRTYVLQNSTVHSIWDMGL 236
            |:|..|  .:....::|.::.|:||:..|...|:||||||||||::|||||||||.:.|||||||
Zfish   218 HIKAQI--DQFREDALDSVLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGL 280

  Fly   237 DLFRIHFAQNSVVQKRTVDGLLTLIEKERQGSTVDRGLLKSLVRMLCDLQIYTSSFEEKFLDATN 301
            :|||.:...:..||.:|:||:|.|||:||.|..|||.||:||:.||.|||||..|||::||:.||
Zfish   281 ELFRFYIISDLKVQSKTIDGILLLIERERSGEAVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETN 345

  Fly   302 QLYKAESQRKMQELEVPEYLQHVNKRLAEENERLRHYLDSSTKHPLIYNVEKELLAEHLTSILQK 366
            :||.||.||.|||.||||||.||||||.||.:|:..|||.||:..||..|||:||.||||:||||
Zfish   346 RLYAAEGQRLMQEREVPEYLHHVNKRLEEEADRVITYLDQSTQKSLIATVEKQLLGEHLTAILQK 410

  Fly   367 GLDSLLEDNRLSDLTLLYGLLSRVKNGTSELCGNFNGFIKKKGRTIVIDPEKDKSMVQDLLDFKD 431
            ||::||::||:.||:|||.|.|||:.|...|..::..:||..|.||||:|||||:|||:||||||
Zfish   411 GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKD 475

  Fly   432 KMDVIVRTCFEHNEKFTNSLREAFEFFINQRANKPAELIAKYVDMKLRSGNKGTTDEELEKTLDK 496
            |:|.|:..||..||||.|.::||||.|||:|.||||||||||||.|||:|||..|||||||.|||
Zfish   476 KVDHIIDVCFMKNEKFVNGMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDK 540

  Fly   497 IMVLFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDSEKSMLSKLKQECGGGFTSKLEGMFKDMEL 561
            ||::||||:||||||||||||||||||||||||||:|||||||||.|||..||||||||||||||
Zfish   541 IMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMEL 605

  Fly   562 SRDINIAFRGHALSNNRDVHNLDLCVSILTMGYWPTYAPTEVTMPPQFINPQQIFNKFYLEKHSG 626
            |:||.:.|:.|....|.. .|::|.|:||||||||||.|.||.:|.:.:..|:||..|||.||||
Zfish   606 SKDIMVQFKQHMQCQNIP-GNIELTVNILTMGYWPTYVPMEVHLPAEMVRLQEIFKTFYLGKHSG 669

  Fly   627 RKLQWQPTLGNCMLRAQFDAGPKELLVSLFQALVLLLFNDKPVLSYEEILAATLIEDGELRRTLQ 691
            ||||||.|||:|:|:|:|..|.|||.|||||.||||:||:....|.|:|..||.|||.|||||||
Zfish   670 RKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEDIKLATGIEDSELRRTLQ 734

  Fly   692 SLACGRARVITKTPKGREILDGDQFDFNNEFTNKLFRIKINQIQMKETNEEQKATEERVFQDRQY 756
            |||||:|||:||.||.:::.|||:|..|::|.:|||||||||||||||.|||.:|.|||||||||
Zfish   735 SLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQY 799

  Fly   757 QIDAAIVRIMKMRKTLSHNLLITELFNQLTFPVKPADLKKRIESLIDRDYMERDKDNQNQYNYVA 821
            |||||||||||||||||||||::|::|||.|||||||||||||||||||||||||:|.|||||||
Zfish   800 QIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYVA 864

  Fly   822  821
            Zfish   865  864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 380/596 (64%)
CULLIN 503..644 CDD:214545 99/140 (71%)
Cullin_Nedd8 750..815 CDD:214883 58/64 (91%)
cul4bNP_001116316.1 Cullin 169..764 CDD:279260 380/597 (64%)
CULLIN 547..687 CDD:214545 99/140 (71%)
Cullin_Nedd8 793..858 CDD:214883 58/64 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 747 1.000 Domainoid score I92
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2660
Inparanoid 1 1.050 961 1.000 Inparanoid score I315
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 1 1.000 - - FOG0000491
OrthoInspector 1 1.000 - - otm25973
orthoMCL 1 0.900 - - OOG6_101788
Panther 1 1.100 - - O PTHR11932
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R16814
SonicParanoid 1 1.000 - - X1830
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1313.010

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