DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul4 and cul2

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:XP_002666627.1 Gene:cul2 / 336088 ZFINID:ZDB-GENE-030131-8032 Length:745 Species:Danio rerio


Alignment Length:764 Identity:221/764 - (28%)
Similarity:375/764 - (49%) Gaps:80/764 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 VKKIVIKNFKDKPTLPDNYSKDTYVKLEEAVIAIQLSKPIKYSLEELYQAVVNMCSHKMDAQLYA 163
            ::.:|:.::.::.|..|.:| |.|      .:.:...:|                   :..:||.
Zfish    21 IRAVVMLDYVERATWNDRFS-DIY------ALCVAYPEP-------------------LGEKLYT 59

  Fly   164 KLKELTEQHVKRNIKLKELTGGSMDKLILLEKINHWWLSFCQQMIMIRSIFLYMDRTYVLQNSTV 228
            :.|...|.||::..| :.|.  |.:|::::  .:.:|..:.:....:..::.|::..::.:|...
Zfish    60 ETKVFLENHVRQLFK-RVLE--SEEKVLVM--YHRYWEEYSKGAEYMDCLYRYLNTQFIKKNKLT 119

  Fly   229 HS-----------------IWDMGLDLFRIHFAQNSVVQKRTVDGLLTLIEKERQG----STVDR 272
            .:                 |.::.||::|....:  .:|...:..||..|:.:|.|    ..|..
Zfish   120 EADLQYGYGGVDMNEPLMEIGELALDMWRKLMIE--PLQPMLIGKLLKEIKNDRCGEDPNQKVIH 182

  Fly   273 GLLKSLV-----RMLCDLQIYTSSFEEKFLDATNQLYKAESQRKMQELEVPEYLQHVNKRLAEEN 332
            |::.|.|     :....|:.|...||..||..|.:.||.|:...:||....:|::.|..||.:|.
Zfish   183 GVINSFVHVEQYKKKFPLKFYQEIFEGPFLTKTGEYYKQEASNLLQESNCSQYMEKVLGRLKDEE 247

  Fly   333 ERLRHYLDSSTKHPLIYNVEKELLAEHLTSILQKGLDSLLEDNRLSDLTLLYGLLSRVKNGTSEL 397
            .|.|.||..|:...:|:..::.::|:|| ..|.....:::...:..|:..:|.||..|.:|...:
Zfish   248 VRCRKYLHPSSYSKVIHECQQRMVADHL-QFLHGECQNIIRQEKRDDMANMYTLLRAVSSGLPHM 311

  Fly   398 CGNFNGFIKKKG--RTIVIDPEKDKSM-VQDLLDFKDKMDVIVRTCFEHNEKFTNSLREAFEFFI 459
            .......|..:|  .||.:..|...:: |:.:|:...|...::.|....::.|.::|.:|....:
Zfish   312 IQELQVHIHDEGIRATINLSQENMPTLFVESVLEVHSKFVQLINTVLNGDQHFMSALDKALTSVV 376

  Fly   460 NQRAN----KPAELIAKYVDMKLRSGNKGTTDEELEKTLDKIMVLFRFIHGKDVFEAFYKKDLAK 520
            |.|..    |..||:|||.|..|:...||.|:.|:|..|...:.:|::|..||||:..|.:.|||
Zfish   377 NYREPKSICKAPELLAKYCDNLLKKSAKGMTENEVEDKLTSFITVFKYIDDKDVFQKIYARMLAK 441

  Fly   521 RLLVGKSASVDSEKSMLSKLKQECGGGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHNLDL 585
            ||:.|.|.|:|||::|::||||.||..|||||..|:.||.:|.|:|..|.....:....|   ||
Zfish   442 RLIHGLSLSMDSEEAMINKLKQACGYEFTSKLHRMYTDMSVSTDLNNKFNNFIKTQETVV---DL 503

  Fly   586 CVS----ILTMGYWP-TYAPTEVTMPPQFINPQ-QIFNKFYLEKHSGRKLQWQPTLGNCMLRAQF 644
            .:|    :|..|.|| |:.|:.....||.:... |:|..||.:..|||||.|...|....::..:
Zfish   504 GISFQIYVLQAGAWPLTHVPSSTFAIPQELEKSVQMFELFYNQHFSGRKLTWLHYLCTGEVKMNY 568

  Fly   645 DAGPKELLVSLFQALVLLLFNDKPVLSYEEILAATLIEDGELRRTLQSLACGRARVITKTPKGRE 709
            .:.|...:|:.:|..|||.||:...:||:|:..:|.:.:.||::|::||.  ..::|:...:..|
Zfish   569 LSKPYVAVVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELQKTIKSLL--DVKMISHDLQKEE 631

  Fly   710 ILDGDQFDFNNEFTNKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSH 774
            |.....|.....||:|..:.||.....|:|.:|.:.|...|.:||:..:.||||||||.||.|.|
Zfish   632 IEPESTFSLIMSFTSKRTKFKITTSMQKDTPQELEQTRSAVDEDRKMYLQAAIVRIMKARKVLRH 696

  Fly   775 NLLITELFNQLTFPVKP--ADLKKRIESLIDRDYMERDKDNQNQYNYVA 821
            |.||.|:.||......|  :.:||.||.|||:.|:||.:.:.::|:|||
Zfish   697 NALIQEVINQSKARFNPSISMIKKCIEVLIDKQYIERSQSSADEYSYVA 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 170/635 (27%)
CULLIN 503..644 CDD:214545 59/146 (40%)
Cullin_Nedd8 750..815 CDD:214883 32/66 (48%)
cul2XP_002666627.1 Cullin 15..640 CDD:307166 176/657 (27%)
Cullin_Nedd8 672..739 CDD:214883 32/66 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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