DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul4 and cul5a

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:NP_001314988.1 Gene:cul5a / 327215 ZFINID:ZDB-GENE-030131-5426 Length:780 Species:Danio rerio


Alignment Length:835 Identity:214/835 - (25%)
Similarity:378/835 - (45%) Gaps:151/835 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 TSNLLNRMGAIHNSKPGD-VKKIVIKNFKDKPTLP----DNYSKDTYVKLEEAVIAIQLSKPIKY 140
            |||||...|::......| ::.||:|..:.:....    |.:|....|.|.:.....::.:.:|.
Zfish     3 TSNLLKNKGSLQFEDKWDLMRPIVLKLLRQESVTKQQWFDQFSDVHAVCLWDDKGPAKIHQALKE 67

  Fly   141 S-LEELYQAVVNMCSHKMDAQLYAKLKELTEQHVKRNIKLKELTGGSMDKLILLEKINHWWLSFC 204
            . |:.:.||...:.||:.|..|.                          |..::|     |..|.
Zfish    68 DILDFIKQAQARVLSHQDDTALL--------------------------KAYIVE-----WRKFF 101

  Fly   205 QQMIMIRSIFLYMDRTYV----------LQNSTVHSIWDMGLDLFRIHFAQNSVVQKRTVDGLLT 259
            .|..::...|..::.|.:          :::|.|..:.   ||.:......|  ::.|..|..:.
Zfish   102 TQCDILPKPFCQLEITLMGKQGSSKKSNVEDSIVRKLM---LDTWNESIFSN--IKNRLQDSAMK 161

  Fly   260 LIEKERQGSTVDR----GLLKSLVRMLCD-----LQIYTSSFEEKFLDATNQLYKAESQRKMQEL 315
            |:..||.|...|.    |:.:|.|. ||.     ||||..:||:.:||:|.:.|:.::...:|:.
Zfish   162 LVHAERLGEAFDSQLVIGVRESYVN-LCSNPEDKLQIYRDNFEKSYLDSTERFYRTQAPSYLQQN 225

  Fly   316 EVPEYLQHVNKRLAEENERLRHYLDSSTK------------HPLIYNVEKELLAEHLTSILQKGL 368
            .|..|:::.:.:|.||.:|...||::..:            :.|:.:.::.:|||         .
Zfish   226 GVQNYMKYADAKLREEEKRALRYLETRRECNSVQALMECCVNALVTSFKETILAE---------C 281

  Fly   369 DSLLEDNRLSDLTLLYGLLSRVKNGTSELCGNFNGFIKKKG--------RTIVIDPEKDKSMVQD 425
            ..:::.|....|.|::.|:.:|.||...:..:....|...|        .||..|.||   .|:.
Zfish   282 PGMIKRNETDKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEK---YVEQ 343

  Fly   426 LLDFKDKMDVIVRTCFEHNEKFTNSLREAFEFFIN--------------------QRANKPAELI 470
            ||...::...:|:..|:.:.:|..:..:|::..:|                    |..:|..||:
Zfish   344 LLTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFKLELPMKQKGVGLKTQPESKCPELL 408

  Fly   471 AKYVDMKLRSG--NKGTTDEELEKTLDKIMVLFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDSE 533
            |.|.||.||..  :|..|.|::|..|.:::::.:::..||||..::|..|.:||::..||..:.|
Zfish   409 ANYCDMLLRKTPLSKKLTSEDIELKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIE 473

  Fly   534 KSMLSKLKQECG--GGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHNLDLCVSILTMGYWP 596
            ::|:..|: |.|  ..:.:||..||:|:::|.|:|..|:.....|...:....:.:.||..|.|.
Zfish   474 ENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQVFKEMHKHNKLALPADSVNIKILNAGAWS 537

  Fly   597 TYA-------PTEVTMPPQFINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRAQFDAGPKELLVS 654
            ..:       |||:    :.:.|:  ...||.:.||||||.|...:.|.::..:.:.|..:|.|:
Zfish   538 RSSEKVFVSLPTEL----EDLIPE--VEDFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVT 596

  Fly   655 LFQALVLLLFNDKP--VLSYEEILAATLIEDGELRRTLQSLACG---RARVITKTPK---GREIL 711
            .||..||..:|.:|  .:|:|.:..||.:.|.||||||.||...   :.:|:...|:   .::..
Zfish   597 TFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVSSPKDFT 661

  Fly   712 DGDQFDFNNEF-----TNKLFRIKINQI-QMKETNEEQKATE-ERVFQDRQYQIDAAIVRIMKMR 769
            |...|..|.||     :....|.|||.| :::.|.|..:..| |.:.|.|..:...||::|||||
Zfish   662 DSTLFFVNQEFSLIKNSKAQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMR 726

  Fly   770 KTLSHNLLITEL---FNQLTFPVKPADLKKRIESLIDRDYMERDKDNQNQYNYVA 821
            |.:::..|.|||   ...:..|.|.. :|::||.||:..|::||:.:.|.:.|:|
Zfish   727 KKITNAQLQTELVEILKNMFLPQKKM-IKEQIEWLIEHKYIKRDETDINTFIYMA 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 163/675 (24%)
CULLIN 503..644 CDD:214545 43/149 (29%)
Cullin_Nedd8 750..815 CDD:214883 24/67 (36%)
cul5aNP_001314988.1 Cullin 20..671 CDD:279260 170/706 (24%)
CULLIN 443..586 CDD:214545 43/149 (29%)
Cullin_Nedd8 713..772 CDD:287520 22/59 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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