DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul4 and Cul4b

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:NP_001100421.1 Gene:Cul4b / 302502 RGDID:1564494 Length:971 Species:Rattus norvegicus


Alignment Length:817 Identity:510/817 - (62%)
Similarity:626/817 - (76%) Gaps:18/817 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KKYKPMDTTELHENTENIAACLKKAENVAPTAAAASSVGRSAFAAQNMNSASTNGERLPNFSKLG 69
            ||.:..||.|.      :....|.||.   :::::||...:|..:|...      ::|.|.|.|.
  Rat   173 KKLRFEDTLEF------VGFDTKMAEE---SSSSSSSSSPTAATSQQQQ------QQLKNKSILI 222

  Fly    70 GSHGEIRTASTTSNLLNRMGAIHNSKPGDVKKIVIKNFKDKPTLPDNYSKDTYVKLEEAVIAIQL 134
            .|...:..|:..:.....:.:..|||||..||:|||||||||.||:||:.:|:.||:|||.|||.
  Rat   223 SSVASVHHANGLAKSSTTVSSFANSKPGSAKKLVIKNFKDKPKLPENYTDETWQKLKEAVEAIQN 287

  Fly   135 SKPIKYSLEELYQAVVNMCSHKMDAQLYAKLKELTEQHVKRNIKLKELTGGSMDKLILLEKINHW 199
            |..|||:||||||||.|:||:|:.|.||.:|:::.|.|:|..|  .:....|:|.::.|:||:..
  Rat   288 STSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQI--HQFREDSLDSVLFLKKIDRC 350

  Fly   200 WLSFCQQMIMIRSIFLYMDRTYVLQNSTVHSIWDMGLDLFRIHFAQNSVVQKRTVDGLLTLIEKE 264
            |.:.|:||||||||||::|||||||||.:.|||||||:|||.|...:..||.:|:||:|.|||:|
  Rat   351 WQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQTKTIDGILLLIERE 415

  Fly   265 RQGSTVDRGLLKSLVRMLCDLQIYTSSFEEKFLDATNQLYKAESQRKMQELEVPEYLQHVNKRLA 329
            |.|..:||.||:||:.||.|||||..|||::||..||:||.||.|:.|||.||||||.||||||.
  Rat   416 RNGEAIDRSLLRSLLNMLSDLQIYQDSFEQRFLQETNRLYAAEGQKLMQEREVPEYLHHVNKRLE 480

  Fly   330 EENERLRHYLDSSTKHPLIYNVEKELLAEHLTSILQKGLDSLLEDNRLSDLTLLYGLLSRVKNGT 394
            ||.:||..|||.:|:..||.:|||:||.||||:||||||:|||::||:.||:|||.|.|||:.|.
  Rat   481 EEADRLITYLDQTTQKSLIASVEKQLLGEHLTAILQKGLNSLLDENRIQDLSLLYQLFSRVRGGV 545

  Fly   395 SELCGNFNGFIKKKGRTIVIDPEKDKSMVQDLLDFKDKMDVIVRTCFEHNEKFTNSLREAFEFFI 459
            ..|..::..:||..|.||||:|||||:|||:|||||||:|.|:.|||..||||.|:::||||.||
  Rat   546 QVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDTCFLKNEKFINAMKEAFETFI 610

  Fly   460 NQRANKPAELIAKYVDMKLRSGNKGTTDEELEKTLDKIMVLFRFIHGKDVFEAFYKKDLAKRLLV 524
            |:|.||||||||||||.|||:|||..|||||||.|||||::||||:|||||||||||||||||||
  Rat   611 NKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLV 675

  Fly   525 GKSASVDSEKSMLSKLKQECGGGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHNLDLCVSI 589
            |||||||:|||||||||.|||..|||||||||||||||:||.|.|:.: :.|.....|::|.|:|
  Rat   676 GKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQY-MQNQNVPGNIELTVNI 739

  Fly   590 LTMGYWPTYAPTEVTMPPQFINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRAQFDAGPKELLVS 654
            |||||||||.|.||.:||:.:..|:||..|||.||||||||||.|||:|:|:|:|..|.|||.||
  Rat   740 LTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVS 804

  Fly   655 LFQALVLLLFNDKPVLSYEEILAATLIEDGELRRTLQSLACGRARVITKTPKGREILDGDQFDFN 719
            |||.||||:||:....|.|||..||.||||||||||||||||:|||:.|.|||::|.|||:|..|
  Rat   805 LFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIEDGDKFICN 869

  Fly   720 NEFTNKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLITELFNQ 784
            ::|.:|||||||||||||||.|||.:|.||||||||||||||||||||||||||||||::|::||
  Rat   870 DDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQ 934

  Fly   785 LTFPVKPADLKKRIESLIDRDYMERDKDNQNQYNYVA 821
            |.|||||||||||||||||||||||||:|.|||||:|
  Rat   935 LKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 385/596 (65%)
CULLIN 503..644 CDD:214545 100/140 (71%)
Cullin_Nedd8 750..815 CDD:214883 58/64 (91%)
Cul4bNP_001100421.1 Cullin 276..871 CDD:279260 385/597 (64%)
CULLIN 654..794 CDD:214545 100/140 (71%)
Cullin_Nedd8 900..965 CDD:214883 58/64 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 759 1.000 Domainoid score I84
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2660
Inparanoid 1 1.050 979 1.000 Inparanoid score I296
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 1 1.000 - - FOG0000491
OrthoInspector 1 1.000 - - otm46179
orthoMCL 1 0.900 - - OOG6_101788
Panther 1 1.100 - - O PTHR11932
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1830
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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