DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul4 and pcu4

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:NP_594195.1 Gene:pcu4 / 2543116 PomBaseID:SPAC3A11.08 Length:734 Species:Schizosaccharomyces pombe


Alignment Length:751 Identity:249/751 - (33%)
Similarity:411/751 - (54%) Gaps:45/751 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 PGDVKKIVIKNFKDKPTLPDNYSKDTYV-----KLEEAVIAIQLSKPIKYSLEELYQAVVNMCSH 155
            |.:.|:||:|.|..:.:   ...::||.     :|..|:..:.....:|...:|||..|.|:.. 
pombe     2 PPEAKRIVVKGFDPRKS---RQRQETYYVTMIDRLNMALQVVMAGLGLKTGYQELYSGVENLTR- 62

  Fly   156 KMDAQLYAKLKELTEQHVKRNIKLK--------ELTGGSMDKLILLEKINHW--WLSFCQQMIMI 210
               |...::...:.:.|:...|:|.        :|.|...|.......:..|  ||   :::.::
pombe    63 ---ADQASRCFNILQHHMSSGIQLLKDSAESFIQLEGTETDTNACTVVVGCWNKWL---ERVEIV 121

  Fly   211 RSIFLYMDRTYVLQNSTVHSIWDMGLDLFRIHFAQNSVVQKRTVDGLLTLIEKERQGSTVDRGLL 275
            ::||.|||:|::..:....:|.::.|.|||........:|...::.||...|......:.|...|
pombe   122 QNIFYYMDKTFLSHHPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLHSSKSTDHAYL 186

  Fly   276 KSLVRMLCDLQIYTSSFEEKFLDATNQLYKAESQRKMQELEVPEYLQHVNKRLAEENERLRHYLD 340
            :..:.||...::|:|.|...:|...::.|..||.:|:|||.:.|||::....|..|:..:..:..
pombe   187 QDAMLMLHRTEMYSSVFVPMYLVMLSRFYDTESSQKIQELPLEEYLEYAMSSLEREDAYVEKFDI 251

  Fly   341 SSTKHPLIYNVEKELLAEHLTSILQKGLDSLLEDNRLSDLTLLYGLLSRVKNGTSELCGNFNGFI 405
            ...|..:...|::.|:..||.: |.||:...:|........|||.|| :..:.|..|...::..:
pombe   252 VRDKKSIRETVQRCLITSHLDT-LTKGISQFIEKRDAHSCKLLYALL-QFNHETEYLIQPWSDCL 314

  Fly   406 KKKGRTIVIDPEKDKSMVQDLLDFKDKMDVIVRTCFEHNEKFTNSLREAFEFFIN----QRANKP 466
            ...|..:|.|..||.::||:||.|...:.|:|...|.|:|..:.::|:|||.|||    .:...|
pombe   315 VDVGFKLVNDESKDDTLVQELLSFHKFLQVVVDESFLHDETLSYAMRKAFETFINGAKGSQREAP 379

  Fly   467 AELIAKYVDMKLRSGNKGTTDEELEKTLDKIMVLFRFIHGKDVFEAFYKKDLAKRLLVGKSASVD 531
            |.|||||:|..||.|.:.:..:.|::...:|:.|||:|..||:|||:||.|:|||||:.||||..
pombe   380 ARLIAKYIDYLLRVGEQASGGKPLKEVFSEILDLFRYIASKDIFEAYYKLDIAKRLLLNKSASAQ 444

  Fly   532 SEKSMLSKLKQECGGGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHNL--DLCVSILTMGY 594
            :|..:|..||:.||..||..|||||:|:.:|::...:||     :::..|||  ||.|::|:..|
pombe   445 NELMLLDMLKKTCGSQFTHSLEGMFRDVNISKEFTSSFR-----HSKAAHNLHRDLYVNVLSQAY 504

  Fly   595 WPTYAPTEVTMPPQFINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRAQFDAGPKELLVSLFQAL 659
            ||:|..:.:.:|.........|.||||.|..|:|:.|..:||:|:::|:|..|.|||.:|||||.
pombe   505 WPSYPESHIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNKELSISLFQAC 569

  Fly   660 VLLLFND---KPVLSYEEILAATLIEDGELRRTLQSLACGRARVITKTPKGREILDGDQFDFNNE 721
            |||.||:   ...:||:::..:|.:.|.:|.||||||:|.|.|.:...||.::......|..|.:
pombe   570 VLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLVMVPKSKKPSPDTMFYVNEK 634

  Fly   722 FTNKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLITELFNQLT 786
            ||:||:|:|||||.:||..:|....:|:|.:|||:::.|:|||:||.::.:.|:.|:..:.|.:.
pombe   635 FTDKLYRVKINQIYLKEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVK 699

  Fly   787 FPVKP--ADLKKRIESLIDRDYMERDKDNQNQYNYV 820
            ....|  :|:|..||.|::::|:||: || :.|.||
pombe   700 DRGIPLVSDVKTAIEKLLEKEYLERE-DN-DIYTYV 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 200/615 (33%)
CULLIN 503..644 CDD:214545 60/142 (42%)
Cullin_Nedd8 750..815 CDD:214883 24/66 (36%)
pcu4NP_594195.1 COG5647 1..734 CDD:227934 249/751 (33%)
CULLIN 416..554 CDD:214545 60/142 (42%)
Cullin_Nedd8 663..730 CDD:214883 24/68 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 321 1.000 Domainoid score I229
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 404 1.000 Inparanoid score I374
OMA 1 1.010 - - QHG53685
OrthoFinder 1 1.000 - - FOG0000491
OrthoInspector 1 1.000 - - otm47383
orthoMCL 1 0.900 - - OOG6_101788
Panther 1 1.100 - - LDO PTHR11932
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R16814
SonicParanoid 1 1.000 - - X1830
TreeFam 1 0.960 - -
1312.860

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