DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul4 and cul5b

DIOPT Version :9

Sequence 1:NP_001163084.1 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster
Sequence 2:XP_009293667.1 Gene:cul5b / 100006147 ZFINID:ZDB-GENE-091113-45 Length:807 Species:Danio rerio


Alignment Length:847 Identity:221/847 - (26%)
Similarity:388/847 - (45%) Gaps:148/847 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 TSNLLNRMGAIHNSKPGD-VKKIVIKNFKDKPTLPDNYSKDTYVKLEEAVIAIQLSKPIKYSLEE 144
            |||||...|::......| ::.||:|..:                 :|:|        .|....:
Zfish     3 TSNLLKNKGSLQFEDKWDLMRPIVLKLLR-----------------QESV--------TKQQWFD 42

  Fly   145 LYQAVVNMC--SHKMDAQLYAKLKELTEQHVKRNIKLKEL---------TGGSMDKLILLEKINH 198
            |:..|..:|  ..|..|:::..|||.....:|:...::.:         .....|...||:....
Zfish    43 LFSDVHAVCLWDDKGPAKIHQALKEDILDFIKQAQAMENIIVFLSLCVRVLSHQDDTALLKAYIV 107

  Fly   199 WWLSFCQQMIMIRSIFLYMDRTYV----------LQNSTVHSIWDMGLDLFRIHFAQNSVVQKRT 253
            .|..|..|..::...|..::.|.:          :::|.|..:.   ||.:......|  ::.|.
Zfish   108 EWRKFFTQCDILPKPFSKLEITLLGNQGSNKKSNVEDSIVRKLM---LDTWNESIFCN--IKSRL 167

  Fly   254 VDGLLTLIEKERQGSTVDR----GLLKSLVRMLCD-----LQIYTSSFEEKFLDATNQLYKAESQ 309
            .|..:.|:..||.|...|.    |:.:|.|. ||.     ||||..:||:.:||:|.:.||.::.
Zfish   168 QDSAMKLVHAERLGEAFDSQLVIGVRESYVN-LCSNTDDKLQIYRENFEKSYLDSTERFYKTQAP 231

  Fly   310 RKMQELEVPEYLQHVNKRLAEENERLRHYLDSSTK------------HPLIYNVEKELLAEHLTS 362
            ..:|:..|..|:::.:.:|.||.:|...||::..:            :.|:.:.::.:|.|....
Zfish   232 SYLQQNGVQNYMKYADGKLREEEKRALRYLETRRECNSVQALMECCVNALVTSFKETILTECPGM 296

  Fly   363 ILQK------GLDSLLEDNRLSDLTLLYGLLSRVKNGTSELCGNFNGFIKKKG--------RTIV 413
            |.:.      |..|..:.:..|:|.|::.|:.:|.:|...:..:....|...|        .||.
Zfish   297 IKRNETESEYGRSSGTKGSASSELHLMFSLMDKVPSGIEPMLKDLEDHIMSAGLADMVASAETIT 361

  Fly   414 IDPEKDKSMVQDLLDFKDKMDVIVRTCFEHNEKFTNSLREAFEFFIN------------------ 460
            .|.||   .|:.||...::...:|:..|:.:.:|..|..:|::..:|                  
Zfish   362 TDSEK---YVEQLLTLFNRFSKLVKEAFQDDPRFLTSRDKAYKAVVNDATIFKLELPLKQKGVSL 423

  Fly   461 --QRANKPAELIAKYVDMKLRSG--NKGTTDEELEKTLDKIMVLFRFIHGKDVFEAFYKKDLAKR 521
              |..:|..||:|.|.||.||..  :|..|.||:|..|.:::::.:::..||||..::|..|.:|
Zfish   424 KTQPESKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRR 488

  Fly   522 LLVGKSASVDSEKSMLSKLKQECG--GGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHNLD 584
            |::..||..:.|::|:..|: |.|  ..:.:||..||:|:::|.|:|.:|:.....|...:....
Zfish   489 LILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQSFKEMHKHNKLALPADS 552

  Fly   585 LCVSILTMGYWPTYA-------PTEVTMPPQFINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRA 642
            :.:.||..|.|...:       |||:    :.:.|:  ...||.:.||||||.|...:.|.::..
Zfish   553 VNIKILNAGAWSRSSEKVFVSLPTEL----EDLIPE--VEDFYKKNHSGRKLHWHHLMSNGIITF 611

  Fly   643 QFDAGPKELLVSLFQALVLLLFNDKP--VLSYEEILAATLIEDGELRRTLQSLACG---RARVIT 702
            :.:.|..:|.|:.||..||..:|.:|  .:|:|.:..||.:.|.||||||.||...   :.:|::
Zfish   612 KNEVGQYDLEVTTFQLAVLFAWNQRPRERISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLS 676

  Fly   703 KTP---KGREILDGDQFDFNNEFT----NKL-FRIKINQI-QMKETNEEQKATE-ERVFQDRQYQ 757
            ..|   ..::..:|..|..|.||:    :|: .|.|||.| :::.|.|..:..| |.:.|.|..:
Zfish   677 YEPVVGSPKDFAEGTVFSINQEFSLIKNSKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILR 741

  Fly   758 IDAAIVRIMKMRKTLSHNLLITEL---FNQLTFPVKPADLKKRIESLIDRDYMERDKDNQNQYNY 819
            ...||::||||||.:|:..|.|||   ...:..|.|.. :|::||.||:..|::||:.:.|.:.|
Zfish   742 TQEAIIQIMKMRKRISNAQLQTELVEILKNMFLPQKKM-IKEQIEWLIEHKYIKRDETDINTFIY 805

  Fly   820 VA 821
            :|
Zfish   806 MA 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul4NP_001163084.1 Cullin 124..721 CDD:279260 171/691 (25%)
CULLIN 503..644 CDD:214545 43/149 (29%)
Cullin_Nedd8 750..815 CDD:214883 25/67 (37%)
cul5bXP_009293667.1 Cullin 20..698 CDD:279260 175/718 (24%)
CULLIN 470..613 CDD:214545 43/149 (29%)
Cullin_Nedd8 740..799 CDD:287520 23/59 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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