DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sand and kvs-4

DIOPT Version :9

Sequence 1:NP_610349.1 Gene:sand / 35777 FlyBaseID:FBgn0033257 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_001367099.1 Gene:kvs-4 / 190011 WormBaseID:WBGene00012967 Length:539 Species:Caenorhabditis elegans


Alignment Length:452 Identity:83/452 - (18%)
Similarity:148/452 - (32%) Gaps:160/452 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRSSFRRR---------EKPAFERFKDHCRHFTA-FMFSNVGII--LLVTFYIIGGAFIFQS--- 53
            |:.:.|||         .||..:...|.....|: |.|.....:  ::..||:.|  .|.|.   
 Worm   133 RKDTIRRRGVGRLLDLINKPVADSNADAFFSSTSEFYFERPPSLFHIVYQFYLNG--VIHQPSNL 195

  Fly    54 -----IEIFEYERL-----------------------KSEKPHRFIARNFSGECLSRIWELTAEN 90
                 ||..||.|:                       :.:||:.|....| ||....:|.:..|.
 Worm   196 CPVDIIEELEYWRIIPDQYLASCCCAQQIDDDDEEVEEQDKPNLFKTLRF-GEIRRCVWNIIEEP 259

  Fly    91 ISFFDHHAYR-RRVNDVLLDYQRAIV------------KKQLKG---PDVEQWSFSGAFLYSLTV 139
            .|.....|:. ..|..||:.....::            :..|.|   .::|.....|...|...|
 Worm   260 ASSGKAQAFAVCSVVFVLISISGLVLGSLPELQVATKQRNNLTGEEFTEMEPMPILGYIEYVCIV 324

  Fly   140 ITTIGYG-NITPHSECGK----------LVTILYAIIGMPLFLLYLSNIGDVLAKSFKWIYSKVC 193
            ..|:.|| .:...:|..|          |:.||..||.|   ||.:..|.....:..|..:..:.
 Worm   325 WFTMEYGLKMLVSAERSKTFRQLLNIIDLLAILPFIIEM---LLLIFGISTEQLRDLKGAFLVIR 386

  Fly   194 LCRICPGVAKRRIIRERRKMRQLARALQMHDMENARGSSSYTSTSSTTSSNSSSSEYTRSSRQSS 258
            :.|:.      |:||. .|:.:.:..|||                                    
 Worm   387 ILRVL------RVIRV-LKLGRYSSGLQM------------------------------------ 408

  Fly   259 SLVDIQYTESDSDIEREIRGSTDEITVPVTVCVFVMVGYILWGALLFGRWEDWNYLD-------- 315
                         ..:.::.|..::.:   :.:.||.|.|.:..|::       :|:        
 Worm   409 -------------FGKTLKASFRQLGM---MAMVVMTGVIFFSTLVY-------FLEKDEPASKF 450

  Fly   316 -----GSYFCLISLSSIGFGDLVPGDRVITADRDKVEVSFILCAIYLLLGMAVIAMCFNLMQ 372
                 ..::|:::::::|:|||.|    :|.....|....|.|.: |:|.:.:..:..|.|:
 Worm   451 HSIPAACWWCIVTMTTVGYGDLTP----VTVPGKLVATGAIACGV-LVLALPITIIVDNFMK 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sandNP_610349.1 Ion_trans_2 123..183 CDD:285168 18/70 (26%)
Ion_trans_2 292..377 CDD:285168 20/94 (21%)
kvs-4NP_001367099.1 BTB_POZ_Kv 121..208 CDD:349626 19/76 (25%)
Ion_trans 265..513 CDD:395416 54/317 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D774951at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.