DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sand and twk-30

DIOPT Version :9

Sequence 1:NP_610349.1 Gene:sand / 35777 FlyBaseID:FBgn0033257 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_492381.3 Gene:twk-30 / 185335 WormBaseID:WBGene00006682 Length:608 Species:Caenorhabditis elegans


Alignment Length:387 Identity:84/387 - (21%)
Similarity:155/387 - (40%) Gaps:108/387 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FMFSNVGIILLVTFYIIGGAFIFQSIEIFEYERLKSEKPHRFIARNFSGECLSRIWELTAENISF 93
            |:..:|.:|..|..|||.||.:||.:|....:.||  |.|.......:.:.:.::|.:...    
 Worm     4 FLSLHVLLIGSVVLYIILGAIVFQMLEGEHLDALK--KDHMAKIEQNAKDYVDKLWSVAKR---- 62

  Fly    94 FDHHAYRRRVNDVLL-----------DY-------QRAIVKKQLKGPDVEQWSFSGAFLYSLTVI 140
             |...| :.|.|::.           ||       .||:  :.....|...|.|:.:..::.|::
 Worm    63 -DRDKY-KNVEDLIKSVKEDTVDDFNDYVDTVFYAHRAV--RHGYDEDSPTWDFANSVFFTTTML 123

  Fly   141 TTIGYGNITPHSECGKLVTILYAIIGMPLFLLYLSNIGDVLAKSFKWIYSKV---CLCRICPGVA 202
            |:||||.:.|.:..|:|..::|.:||:||.|:.::|:...|:::..:::.::   ||        
 Worm   124 TSIGYGYVAPSTFGGRLFGVIYCLIGIPLTLVTVANVAKFLSETIFFLHYELWNKCL-------- 180

  Fly   203 KRRIIRERRKMRQLARALQMHDMENARGSSSYTSTSSTTSSNSSSSEYTRSSRQSSSLVDIQYTE 267
                                                          |:.|..:.......:|...
 Worm   181 ----------------------------------------------EWKRKRKGEVEADPLQPMF 199

  Fly   268 SDSDIEREIRGSTDEITV----PVTVCVFVMVGYILWGALLFGRWEDWNYLDGSYFCLISLSSIG 328
            .|.:.|.||   .|.:.:    |:||..||.| |....|.:...||.|.|::..||..||:.::|
 Worm   200 GDDENEEEI---LDRVRLVRFPPLTVFFFVFV-YGCIAAWVVRYWETWTYVESLYFIFISILTVG 260

  Fly   329 FGDL--VPGDRVITADRDKVEVSFILCAIYLLLGMAVIAMCFNLMQEQVVHNIRAIKRGFKA 388
            |||:  .||:..:|             ..::::|:.:..||.:::....:..|..:.|..|:
 Worm   261 FGDIRPSPGNIWVT-------------LAFVVVGVILTTMCMDVVGRMYLKEIHYLGRKLKS 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sandNP_610349.1 Ion_trans_2 123..183 CDD:285168 20/59 (34%)
Ion_trans_2 292..377 CDD:285168 23/86 (27%)
twk-30NP_492381.3 Ion_trans_2 103..166 CDD:285168 20/62 (32%)
Ion_trans_2 224..298 CDD:285168 23/87 (26%)
FN3 379..469 CDD:238020
FN3 475..565 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1418
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 1 1.000 - - FOG0000030
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.