DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sand and twk-28

DIOPT Version :9

Sequence 1:NP_610349.1 Gene:sand / 35777 FlyBaseID:FBgn0033257 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_508732.3 Gene:twk-28 / 183714 WormBaseID:WBGene00006680 Length:523 Species:Caenorhabditis elegans


Alignment Length:423 Identity:110/423 - (26%)
Similarity:186/423 - (43%) Gaps:103/423 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSRRSSFRRREKPAFERFKDHCRHFTAFMFSNVGIILLVTFYIIGGAFIFQSIEIFEYERLKSE 65
            :|...:....:||..|...|....|        ||:::|:..|:|.|||:|:.:          |
 Worm    38 ISDDETEVETKEKKLFVYAKRILPH--------VGLVILLFLYLIAGAFLFRYL----------E 84

  Fly    66 KPHRFIARN--------FSGECLSRIWELTAENISFFDHHAYRRRVNDVLLDYQRAIVKKQLKG- 121
            .|.....||        ...|....||.:|.::    |:...|...|.:..:|...:||...:. 
 Worm    85 APKELETRNHELTTILGLRDEFQDHIWNITQDS----DNRISREAFNAINQEYFEQLVKNMFQAY 145

  Fly   122 ---------------PDVEQWSFSGAFLYSLTVITTIGYGNITPHSECGKLVTILYAIIGMPLFL 171
                           .|...|:|..:..::.||||||||||:.|.:..|::..|::|::|:||.|
 Worm   146 RNQFITAKHLLNKTREDEVLWTFPNSMFFAATVITTIGYGNLVPITVTGRVACIIFALLGIPLLL 210

  Fly   172 LYLSNIGDVLAKSFKWIYSKVCLCRICPGVAKRRIIRERRKMRQLARALQMHDMENARGSSSYTS 236
            :.:::||..|::...::|      |...|. ||::.|:.:|:                 :|.|.|
 Worm   211 VTIADIGKFLSEFLSYLY------RSYRGF-KRKLRRQSKKI-----------------TSQYRS 251

  Fly   237 TSSTTSSNSSSSEYTRSSRQSSSLVDIQYTESDSDIEREIRGSTDEITVPVTVCVFVMVGYILWG 301
            .|.:.||:...|    |...|.:|.||     |||.|   ..:.||:.:||.:.:.|::.|...|
 Worm   252 QSQSRSSSVMGS----SKAGSMNLHDI-----DSDSE---DSAGDELRIPVFMVLLVLLAYTAIG 304

  Fly   302 ALLFGRWEDWNYLDGSYFCLISLSSIGFGDLVPGDRVITADRDKVEVSFILCAIYLLLGMAVIAM 366
            ..||..||...|.:..|||.|:::::||||:||.::|.        |.|.:.  |::.|:::..|
 Worm   305 GFLFQSWEHLEYFEAFYFCFITMATVGFGDIVPNEQVY--------VFFTMA--YIIFGLSLATM 359

  Fly   367 CFNLMQEQVVHNIR-----------AIKRGFKA 388
            |.:|...:.:..|.           |:..|.:|
 Worm   360 CIDLAGTEYIRKIHYLGTKMEDAKGAVMTGLQA 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sandNP_610349.1 Ion_trans_2 123..183 CDD:285168 24/59 (41%)
Ion_trans_2 292..377 CDD:285168 26/84 (31%)
twk-28NP_508732.3 Ion_trans_2 <166..222 CDD:285168 23/55 (42%)
Ion_trans_2 295..370 CDD:285168 26/84 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1418
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 1 1.000 - - FOG0000030
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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