DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sand and twk-17

DIOPT Version :9

Sequence 1:NP_610349.1 Gene:sand / 35777 FlyBaseID:FBgn0033257 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_001024464.1 Gene:twk-17 / 181024 WormBaseID:WBGene00006671 Length:576 Species:Caenorhabditis elegans


Alignment Length:389 Identity:94/389 - (24%)
Similarity:174/389 - (44%) Gaps:92/389 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 MFSNVGIILLVTFYIIGGAFIFQSIEI-FEYERLKSEKPHRF------------IARNFSGEC-- 79
            :..:||:.:|:..||..||.:|..:|. .|.|..|::..|.|            :..|.|.:.  
 Worm   140 LLPHVGLNVLLLSYIAMGATVFIWLEADHELEGRKAKVKHVFDIYSQIMNETIALTNNQSDQATI 204

  Fly    80 LSRIWELTAENISFFDHHAYRRRVNDVLLDYQRAIVKKQLKGPDVE----QWSFSGAFLYSLTVI 140
            :||:..| .|::|  ..|.|..:..|.          .||...:.:    :|:|:.|.||:||||
 Worm   205 VSRMRPL-LESLS--RAHEYDDKFTDT----------NQLWTGEQDGMTTRWTFAAATLYALTVI 256

  Fly   141 TTIGYGNITPHSECGKLVTILYAIIGMPLFLLYLSNIGDVLAKSFKWIYSKVCLCRICPGVAKRR 205
            |:.||.::||.::.|::.|:.:.:||:||..:..::||..|::.....|:|:        :|..:
 Worm   257 TSTGYDHVTPATDPGRIFTVFFGLIGIPLMFITAADIGKFLSEIVIRTYAKL--------LAMWK 313

  Fly   206 IIRERRKMRQLARALQMHDMENARGSSSYTSTSSTTSSNSSSSEYTRSSRQSSSLVDIQYTESDS 270
            :|   ..:.:|.|                |....|...:..|.|..:|.::::|.:|      |.
 Worm   314 MI---ANLVELVR----------------THLFDTDVDSIDSMELKKSKKRNASSLD------DE 353

  Fly   271 DIEREIRGSTDEITVPVTVCVFVMVGYILWGALLFGRWED---WNYLDGSYFCLISLSSIGFGDL 332
            :.|.|    .|.:.:|:.....:::||...|:|||..:|.   |:::.|.:|...::::||.|::
 Worm   354 ECEDE----EDRLQLPIASYFTLIIGYCCVGSLLFNTFEKGPVWSFIHGVFFSFNTITTIGLGNI 414

  Fly   333 VPGDRVITADRDKVEVSFILCAIYLLLGMAVIAMCFNLMQEQV------VH----NIRAIKRGF 386
                      |.:......|...|:::|:|||....:|....:      :|    .||..:|||
 Worm   415 ----------RVQQHYYLALAVSYVIIGLAVITASLDLCSSTLKRTFTKLHYFGRKIRGARRGF 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sandNP_610349.1 Ion_trans_2 123..183 CDD:285168 23/63 (37%)
Ion_trans_2 292..377 CDD:285168 21/93 (23%)
twk-17NP_001024464.1 Ion_trans_2 <242..299 CDD:285168 23/56 (41%)
Ion_trans_2 371..449 CDD:285168 21/87 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000030
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.