DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lig and Ubap2

DIOPT Version :9

Sequence 1:NP_001260795.1 Gene:lig / 35771 FlyBaseID:FBgn0020279 Length:1417 Species:Drosophila melanogaster
Sequence 2:XP_006538286.1 Gene:Ubap2 / 68926 MGIID:1916176 Length:1138 Species:Mus musculus


Alignment Length:1324 Identity:352/1324 - (26%)
Similarity:527/1324 - (39%) Gaps:358/1324 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 ATTEQLRIAQITNSTTEDPQINEKVLLLLTMTQRSEEEVCCALNECDYDLEAAANFLIE------ 123
            ||.||:|:||:. ....|.....||..|:.:|.::::|...||::|:.|:..|.|.|:|      
Mouse    40 ATAEQMRLAQVI-FDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLEGNSDTT 103

  Fly   124 --ELPQGAFAKYEKKRKNKAANNTADGAAGDGDWADGNGNADRREKSRNRSSNRGGTRGSSDSRG 186
              |...|       |:||..              .:.:.|.:.|||...|.::||  ||:::.:|
Mouse   104 SWETVGG-------KKKNFG--------------RESSENKENREKRTEREASRG--RGTNNRKG 145

  Fly   187 WRGRETRENERNQRESREPWSGQNAGQD--RGDDRANDNYRGQRNGGGRSGPGGGGRGGGFVSRS 249
            ..|...||           :.|:..|.|  :||..|.   ||:|           .||.||....
Mouse   146 RGGNRVRE-----------FKGEENGIDCSQGDKPAE---RGKR-----------ARGRGFGRGR 185

  Fly   250 GRGGGRMGGRTGGPRGDRGSGGPGGAYGSGRGGNANEDHHEVELWDNTIAQNA-----EKQQQAH 309
            |||.||...::.|..............|.|.         ::.:|:  .|||.     |...::|
Mouse   186 GRGTGRFSAQSMGTFNPADYSESMSTDGCGT---------KLAVWE--AAQNGTDEGPEGLAKSH 239

  Fly   310 D--------------DAW----GDWNNEEYEGSLKDSKVFTTSNLATQSAANVVSGTGASVTAV- 355
            .              .||    .:|..|::...|.::||||.|:...::  :|..|....:.|: 
Mouse   240 SMSQEPPSKSSYGLKGAWKNSVEEWTTEDWTEDLSETKVFTASSAPAEN--HVTPGHSIDLVALL 302

  Fly   356 ----PAAAGTEI-----SAPPGLEHQLVQQGSHLEESSSSGPAAVT-----PPATLS---GSATT 403
                |....||:     |...|....||...|......:.|.|..|     .|.:||   ||...
Mouse   303 HKPAPPTQATEVNSFETSQQQGFGQALVFTNSQHNNQMAPGTANSTSASSYSPQSLSSVLGSGFG 367

  Fly   404 PLLQYSAA-VSN--------PP-----PQLQSQGTQSGAGTGASAAAGGGAGSTPSSFVSASPDT 454
            .|.|.:.. :||        ||     |...|......|...|:.||.....|.|...|.:..| 
Mouse   368 ELPQSNMVNISNSQILDKLKPPGLSPFPAASSAQQNDTASPPATTAAWDLKPSAPQPSVLSRLD- 431

  Fly   455 FSSAASAAATLVHQAQKQQQLQQQTTPIKPSATLSVEQSQYFNSLASQGVSPGSVPVQSAPAGYA 519
            |.|....:..|...:|:||. |.|...:.|....|      |:|||.        |.:|      
Mouse   432 FKSQPEPSPVLSQLSQRQQH-QTQAVSVPPPGLES------FSSLAK--------PRES------ 475

  Fly   520 QNPVAAYSQTSTSVGVSQYPN-TYANVFASGTAAGAGTAEQSQQQPQ-IRRARVKLPPPSKIPAS 582
                .|....||...:.|.|| |..|:.::           .|.||: |:..:.::||.||:|.|
Mouse   476 ----TAGDGPSTVSRLLQLPNMTVENIVSA-----------HQPQPKHIKLPKRRVPPASKVPVS 525

  Fly   583 AVEMPGDNALNNIGYLDVQFGALDFGTDDGFEPLPEKVGSGFSIDGQQQQQQPDDYQSKSQQQQQ 647
            ||||||.   :::..|:||||||:||:    ||...:.||..|. .:...|.|.....||     
Mouse   526 AVEMPGS---SDVTGLNVQFGALEFGS----EPSLSEFGSAASA-SENSNQIPISLYPKS----- 577

  Fly   648 VTLAAGLQSS-QISDALNAAGYTSRSTSQQQQGVSSAVNATIDQLTKSDPYGQTGGSGNAYQNAY 711
              |:..|.:| .::.|:.::.||: |........|||:::| ..:|.|..|.|   |....:.||
Mouse   578 --LSEPLNASFPMTSAVQSSTYTT-SVVTSSTLTSSALSST-SPVTTSSSYDQ---SSVHTRIAY 635

  Fly   712 QSSGASKTASGFPTTAPGGYSSSTYANVQSSVANSYQQQGYGSYQPSSYQQQAGSGAQSGTGAVS 776
            |||.:.      |.:|||            ||||.:                             
Mouse   636 QSSASP------PDSAPG------------SVANGH----------------------------- 653

  Fly   777 GGGGT-----ATQNIPVGGSSSQNS-TSVSTSSGVSSNSGSTGNGGVVSGQTGANQAAVSNNNSV 835
            |||.:     .|.::|....:..:: .||||..|.:|.:....:    |.|..|...:::...:.
Mouse   654 GGGRSQHTVDTTSSVPAPKKTDPSALPSVSTLPGPASCTALLPS----SAQHTATLPSLTPAAAE 714

  Fly   836 SGSSSVSNVTAGVASGNVAGVGGGVSQSGVSSGVGVPGGSASSVGVNVNNNSSSASSVGAATVAQ 900
            ..||.:|.:::.: ||:         |:.::|.......|......:|.:.:|||:...|||.|.
Mouse   715 LSSSPLSQLSSSL-SGH---------QNSMTSAHATRSTSTPHTHASVESTASSAAFSAAATSAP 769

  Fly   901 TA-------TGTTAAVLASLTNKNTSSSNSSGSGGSAATTTGNASGQGAGASTGGVGSSSGAGGA 958
            :|       .|:.:.|.:......|.|..||.:..:|..|:|.|                     
Mouse   770 SAPSSGVVLPGSMSTVSSLCLGGTTVSVPSSSTRATALVTSGKA--------------------- 813

  Fly   959 GSGGGSGSGLVPTNIQ------MVSQYIQTG----LPYYQQPVYSYEELQMMQQRVPHVQGYYDL 1013
                       |.|:.      :.:||: .|    ||.|  |:|.|:||||:|.|:|  ..||.:
Mouse   814 -----------PPNLPQGVPPLLHNQYL-VGPGGLLPAY--PIYGYDELQMLQSRLP--MDYYGI 862

  Fly  1014 NYPPASLGAGRD-NLGSVTYSAMNDGRFARTDNNSSPVGNVSSTMSQQAGSSA------PMLN-- 1069
            .:...:..|.|| ||.:..||. :..:|.|.| ::||....:...:||:.|..      |.||  
Mouse   863 PFAAPTALASRDGNLANNPYSG-DVTKFGRGD-SASPAPPTTPAQAQQSQSQTHHTAQQPFLNPG 925

  Fly  1070 VPYAYFYGG----NVMPGSFQYGTPAIYPQIPAANTASGQQFPKPSY--SAGYG----STSYDTL 1124
            :|..|.|.|    ..:|.:||||.....|...|.........|...:  ::|||    ||.||.|
Mouse   926 LPPGYSYTGLPYYTGVPSAFQYGPTMFVPPTSAKQHGVALSTPPTPFQQASGYGQHAYSTGYDDL 990

  Fly  1125 SQTTQ--DYSKGGYSSSVNQQSKTQTVSNQSQ-----AGTG-SDLTSSMYGKGHVALNKVNSYEK 1181
            :|.|.  ||:||||..| :|.....|.|...:     :||| .|:|.|:|       ||..:::|
Mouse   991 TQGTAAGDYTKGGYGGS-SQAPNKSTGSGPGKGVSVSSGTGLPDMTGSVY-------NKTQTFDK 1047

  Fly  1182 QSFHSGTPPPFNMPNT---------QTAGGTSAQPYGMYLPMPAAGHHNMIHQPIHQDSNS-AGQ 1236
            |.||:||||||::|:.         ..|.|.:..|:...:|.....|..::|..:.||:.| :||
Mouse  1048 QGFHAGTPPPFSLPSALGSTGPLAPAAAPGYAPAPFLHIMPAHQQPHSQLLHHHLQQDAPSGSGQ 1112

  Fly  1237 RQQSTS-QSKS-AGKQGY-SPSYW 1257
            |.|.:| |.|| |.|..| |..||
Mouse  1113 RSQPSSLQPKSQASKPTYGSAPYW 1136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ligNP_001260795.1 UBA_UBP2_like 85..122 CDD:270463 11/36 (31%)
CAF-1_p60_C 498..589 CDD:292150 28/92 (30%)
DUF3697 575..607 CDD:289261 18/31 (58%)
Ubap2XP_006538286.1 UBA_UBP2_like 59..96 CDD:270463 11/36 (31%)
DUF3697 518..547 CDD:372135 18/31 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850000
Domainoid 1 1.000 135 1.000 Domainoid score I4955
eggNOG 1 0.900 - - E1_2C0H4
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 145 1.000 Inparanoid score I4411
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG47464
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003488
OrthoInspector 1 1.000 - - otm42422
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR16308
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4985
SonicParanoid 1 1.000 - - X2380
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.980

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