DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lig and ubap2a

DIOPT Version :9

Sequence 1:NP_001260795.1 Gene:lig / 35771 FlyBaseID:FBgn0020279 Length:1417 Species:Drosophila melanogaster
Sequence 2:XP_017208298.1 Gene:ubap2a / 563733 ZFINID:ZDB-GENE-070424-16 Length:1176 Species:Danio rerio


Alignment Length:1358 Identity:353/1358 - (25%)
Similarity:545/1358 - (40%) Gaps:326/1358 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 GVSHAAAAGKKGGQDASKTDKPEKAQPKATTEQLRIAQITNSTTEDPQINEKVLLLLTMTQRSEE 101
            ||..|.....|.....::|.:|:| |.:||.||:|:||:... ..|....:||..|:.:|.::::
Zfish     6 GVERARGTRDKALPTTTQTTQPQK-QLQATAEQIRLAQMIYD-KNDADFEDKVKQLMEVTGKNQD 68

  Fly   102 EVCCALNECDYDLEAAANFLIEELPQGAFAKYEKKRKNKAANNTADGAAGDGDWADGNGNADRRE 166
            :...||::|:.|:..|.|||:|.....  ..:|...|.|:...       ||..::...|.:.||
Zfish    69 DCMVALHDCNEDVNRAINFLLEGTSDA--TSWETVGKKKSIGK-------DGPSSESKENKENRE 124

  Fly   167 KSRNRSSNRGGTRGSSDSRGWRGRETRENERNQRESREPWSGQNAGQDRGDDRANDNYRGQRNGG 231
            | :.|.|::|  ||....|| ||.......|.:....:|     |..:||.||            
Zfish   125 K-KERESSKG--RGGPSRRG-RGTSRNRPARTEENGVDP-----APVERGADR------------ 168

  Fly   232 GRSGPG--GGGRGGGFVSRSGRGGGRMGGRTGGPRGDRGSGGPGGAYGSGRGGNANEDHHEVELW 294
            ||.|.|  .||||.|....:.|...: |..|..|.......|...::.......||:.......|
Zfish   169 GRRGRGRVSGGRGRGRAPATSRFTAQ-GMGTFNPADYTTDSGTSNSHADVWETGANDTTDGTVAW 232

  Fly   295 DNTIAQNAEKQQQAHDDAWG--DWNNEEYEGSLKDSKVFTTSNLATQSAANVVSGTGASVTAV-- 355
            .||:            |.|.  ||:.:.   ||.::||| ||:.|..:..::..|....::.:  
Zfish   233 QNTL------------DEWAAEDWSEDV---SLSETKVF-TSSCAPPTENHITPGQSLDLSTLLQ 281

  Fly   356 -----PAAAGTE-ISAPPGLEHQLVQQGSHLEESSSSGPAAVTPP-------ATLS-------GS 400
                 ....|.: :.:..||.|.||...||.:.:.:.|    ||.       ||||       |.
Zfish   282 KPVDREEVGGLKAVGSSQGLGHSLVFTNSHHQPARNGG----TPAGSNSYTHATLSSVLGSGFGE 342

  Fly   401 ATTPLLQYSAAVSNPPPQLQSQG----TQSGAGTGASAAAGGGAGSTPSSFVSASPDTFSSAASA 461
            ...|.|..:|. .....||:..|    |...:.||.:....||...|..|..|:|.|.......:
Zfish   343 LGGPKLGQTAG-QQILEQLKGPGLGQLTSQPSSTGTNCTPVGGLVGTGMSVPSSSWDIKPPGTQS 406

  Fly   462 AATLVHQAQKQQQLQQQTTPIKPSATLSVEQSQYFNSLASQG---------------VSPGSV-- 509
            :.:|..|..::.|:|.:     ||..||....:..:||...|               .:.|::  
Zfish   407 STSLPSQFSREFQMQPE-----PSLVLSQLAQRQQSSLTHTGPLARQPSPPPLSTPSTAQGTLEA 466

  Fly   510 -PVQSAPAGYAQNPVAAYSQTSTSVGVSQYPNTYANVFASGTAAGAGTAEQSQQQPQIRRARVKL 573
             |....|:.:...|..|.|||..|.|                        .|.||.||:..:.::
Zfish   467 FPKAPEPSQHRDGPSMAPSQTGDSQG------------------------SSTQQRQIKTQKRRI 507

  Fly   574 PPPSKIPASAVEMPGDNALNNIGYLDVQFGALDFGTDDGFEPLPEKVGSGFSIDGQQQQQQPDDY 638
            ||.||||||||||||.   .::..|:|||||||||::...                     ||..
Zfish   508 PPTSKIPASAVEMPGS---ADVSGLNVQFGALDFGSESAL---------------------PDFS 548

  Fly   639 QSKSQQQQQVTLAAGLQSSQISDALNAAGYTSRSTSQQQQGVSSAVNATID---QLTKSDPYGQT 700
            ||::...:.:...|.:..||              :|...:.:|.::::.:.   .|..||     
Zfish   549 QSENCSSEPIRETAVVSQSQ--------------SSLYSKPISESLSSPVPLLLPLASSD----- 594

  Fly   701 GGSGNAYQNAYQS------SGASKTASGFPTTAPGGYSSSTYANVQSSVANSYQQQGYGSYQPSS 759
                    :.|.|      |.|...::....|||...|||:.::..||..||: ..|...:...:
Zfish   595 --------SIYPSPSVPLPSLAPSHSTPSSATAPSSSSSSSSSSAASSAGNSF-DCGVAPHSRLT 650

  Fly   760 YQQQAGSGAQSGTGAVSGG--GGTATQNIPVGGSSS---QNSTSVSTSSGVSSNSGSTGNGGVVS 819
            :.|     ::..:|.|:.|  |...:..:....|||   |.|.|:.:::.|:.::.|:    ::.
Zfish   651 FSQ-----SKEPSGPVTNGFNGARTSAALDTTSSSSTPKQESPSLVSNTSVAPSAPSS----LLP 706

  Fly   820 GQTGANQAAVSNNNSVSGSSSVSNVTAGVASGNVAGVGGGVSQSGVSSGVGVPGGSASSVGVNVN 884
            .....:.:|:.:..|...|:|:..:::.|:||:                     .|.|::....:
Zfish   707 SSVTPHSSALPSLASELSSASLPPLSSHVSSGH---------------------PSVSALCTTSS 750

  Fly   885 NNSSSASSVGAATVAQTA-TGTTAAVLASLTNKNTSSSNSSGSGGSAATTTGNASGQGAGASTGG 948
            :..:|..||.:...:..| :....:.|||      ||.|:|.|||::....| ..|.|..     
Zfish   751 HTYTSVDSVNSLAPSSMAFSSPPVSALAS------SSMNNSVSGGNSLHGPG-VLGHGPN----- 803

  Fly   949 VGSSSGAGGAGSGGGSGSGLVPTNIQ------MVSQYIQTG---LPYYQQPVYSYEELQMMQQRV 1004
             ||:..|........|.||..|.|:.      :.:|||...   ||.|.| :|.||:|.|:|.|:
Zfish   804 -GSTPSAVRTAQLLSSSSGKAPPNLSQGVPPLLPNQYIMGPGGLLPAYPQ-IYGYEDLHMLQSRL 866

  Fly  1005 PHVQGYYDLNYP-PASLGAGRD-NLGSVTYSAMNDGRFARTDNNS-SPVGNVSSTMSQQA----- 1061
            |  ..||.:.:| |.:..:||| :|.|..||. :..:|.|.::.| :|..::|:..:.|.     
Zfish   867 P--MDYYGITFPGPTAPLSGRDGSLASNPYSG-DVTKFGRGESTSPAPSSSLSAAHAPQTAQPPQ 928

  Fly  1062 ---------------GSSAPMLN--VPYAYFYGG-------NVMPGSFQYGTPAIYPQIPAANTA 1102
                           .:..|.||  :|..|.|.|       ..:|.:||||.....|...|....
Zfish   929 AQSQGQNQPQPQGHHNTQQPFLNPALPPGYSYTGLPYYPGVPGVPSAFQYGPTMFVPPASAKQHG 993

  Fly  1103 SGQQFPKPSYS--AGYG----STSYDTLSQ--TTQDYSKGGYSSSVNQQSKTQTVSNQSQAGTGS 1159
            .|...|...:.  :|||    |:.||.|:|  ...|||| |||:|    |:||..|..|..|.|:
Zfish   994 MGLSNPTTPFQQPSGYGQHAFSSGYDDLTQGPAGSDYSK-GYSNS----SQTQAKSAASGPGKGT 1053

  Fly  1160 DL-------TSSMYGKGHVA---LNKVNSYEKQSFHSGTPPPFNMPNTQTAGGT----------- 1203
            |:       |||..|...::   .||...:|||.||:|||||||:|:  ..|||           
Zfish  1054 DMRIPGVSVTSSNSGVPDISGTVYNKTQPFEKQGFHAGTPPPFNLPS--ALGGTGPLTPGAAPGY 1116

  Fly  1204 SAQPYGMYLPMPAAGHHNMIHQPIHQDSNSA-GQRQQSTS--QSKSAGKQGYSPS-YW 1257
            :..|:...||.....|..::|..:.||.... .||.||::  |.....|..|..| ||
Zfish  1117 APAPFLHILPAHQQPHSQLLHHHLTQDGQGGPSQRSQSSTMQQKTQVNKSNYGSSPYW 1174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ligNP_001260795.1 UBA_UBP2_like 85..122 CDD:270463 11/36 (31%)
CAF-1_p60_C 498..589 CDD:292150 31/108 (29%)
DUF3697 575..607 CDD:289261 20/31 (65%)
ubap2aXP_017208298.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595836
Domainoid 1 1.000 128 1.000 Domainoid score I5261
eggNOG 1 0.900 - - E1_2C0H4
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 165 1.000 Inparanoid score I4165
OMA 1 1.010 - - QHG47464
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003488
OrthoInspector 1 1.000 - - otm25570
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR16308
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4985
SonicParanoid 1 1.000 - - X2380
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.980

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