DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lig and pqn-59

DIOPT Version :9

Sequence 1:NP_001260795.1 Gene:lig / 35771 FlyBaseID:FBgn0020279 Length:1417 Species:Drosophila melanogaster
Sequence 2:NP_490727.1 Gene:pqn-59 / 266819 WormBaseID:WBGene00004143 Length:712 Species:Caenorhabditis elegans


Alignment Length:861 Identity:183/861 - (21%)
Similarity:299/861 - (34%) Gaps:263/861 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 KAQPKATTEQLRIAQIT----NSTTEDPQINEKVLLLLTMTQRSEEEVCCALNECDYDLEAAANF 120
            |...|||::|.|:|::|    :...||.|...|.::..|...:::.|:  ||.:.|.:|..|.:.
 Worm     4 KGDKKATSDQARLARLTLEGNSGNEEDIQFMIKTIIETTGCTQAQAEI--ALLDTDNNLYGAIDH 66

  Fly   121 LIEELPQGAFAKYEKKRKNKAANNTADGAAGD--GDWADGNGNADRREKSRNRSSN--------R 175
            :::                          |||  ..|.:..|....::|....|.|        |
 Worm    67 ILD--------------------------AGDKLDSWTEQKGAKKEKKKPEEGSYNNRGFVARGR 105

  Fly   176 GGTRGSSDSRGWRG------RETRENERNQRESREPWSGQNAGQDRGDDRANDNYRGQRNGGGRS 234
            ||..|..| ||.||      ||:|:|.|:.|:::|                        ....||
 Worm   106 GGGTGFVD-RGGRGRSNGAPRESRDNNRDNRDNKE------------------------GAAPRS 145

  Fly   235 GPGGGGRGGGFVSRSGRGGGRMG-GRTGGPRGDRGSGGPGGAYGSGRGGNANEDHHEVELWDNTI 298
            ..||..:  .:|.|.||||.|.| .|...|    .|.....|:      .|:.|.::.:: |.|:
 Worm   146 TRGGFEK--PYVGRGGRGGARGGYSRAVAP----SSALEPDAF------TADLDENQTKV-DTTV 197

  Fly   299 AQNAEKQQQAHDDAWGDWNNEEYEGSLKDSKVFTTSNLATQSAANVVSGTGASVTAVPAAA---- 359
            .                    |.:..:::|   .|:.:.|.||...:     |..||.|||    
 Worm   198 T--------------------EVQPPVEES---VTATVPTSSAPAPI-----SFAAVAAAAHRKE 234

  Fly   360 --------GTEISAPPGLEHQLVQQG-----SHLEESSSSGPAAVTPPATLSGSATTPLLQYSAA 411
                    ..:.:|||  ...|..|.     :.::|..::.|....|..:..........|..::
 Worm   235 ALRKHQAQNPQPAAPP--RRSLSPQPPLPSVAPVKEEPAAAPVFFEPETSHQPEKEDGFFQNESS 297

  Fly   412 V------------------SNPPPQLQSQGTQ--SGAGTGASAAAGGGAGSTPSSF-VSASPDT- 454
            |                  |.|.|. |:..||  :..|.|.|.|.|.|....||:. |...||. 
 Worm   298 VLAEEQTPNVSTHHDENVQSTPEPN-QAWTTQLKTDLGIGLSEAPGLGLSPIPSAAPVQIIPDPG 361

  Fly   455 FSSAASAAATLVH-------QAQKQQQLQQQTTPIKPSATLSVEQSQYFNS--LASQGVSP--GS 508
            .....:.|.|.:|       :|....||....:   .:|::|......|||  :..:.|.|  .|
 Worm   362 VEFVGTTAPTNIHDYSFGFVEAAPSPQLPSTES---SAASISNASENIFNSSRIMPKQVEPERTS 423

  Fly   509 VP-------VQSAPAGYAQ-NPVAAYSQTSTSVGVS--QYPNTYANVFASGTAAGAGTAEQSQQQ 563
            :|       ..|.|..|.| |...:|..:|.|...:  ..||.:.|   ||......:|:|.|.|
 Worm   424 IPNGDYNLKSTSPPLSYGQSNRGLSYDTSSASYQPTDRMAPNKFNN---SGPLPTQQSAQQHQPQ 485

  Fly   564 PQIRRA-------RVKLPPPSKIPAS----------AVEMPGDNALNNIGYLDVQFGALDFGTDD 611
            .|.::|       :.:.||....|..          ..::|....:||  |:::           
 Worm   486 QQQQQAPQQPVQQQQQTPPAQSQPTGHPQQHPHMMFTQQLPYAPYMNN--YMNM----------- 537

  Fly   612 GFEPLPEKVGSGFSIDGQQQQQQPDDYQSKSQQQ-QQVTLAAGLQSSQISDALNAAGYTSRSTSQ 675
             :.|:|          |.:.:|    |.:...|. ..|.|.:.|.::.:|.|.:|        .|
 Worm   538 -YNPMP----------GVRDEQ----YTAALMQYGMGVDLTSLLPTAPLSQAASA--------QQ 579

  Fly   676 QQQGVSSAVNATIDQLTKSDPYGQTGGSGNAYQNAYQSSGASKTASGFPTTAPGGYSSSTYANVQ 740
            .|.|.....:..:|       :.:.|...:..|...|:|...         .|.|:.::.|.. |
 Worm   580 VQSGQQRETHGLMD-------FNKFGSQSSRDQQPQQASNVG---------PPPGFQATNYMQ-Q 627

  Fly   741 SSVANSYQQQGYGSYQPSSYQQQAGSGAQSGTGAVSGG----GGTATQNIPVGGSSSQNSTSVST 801
            .::::.:.||    |.|:.:|...........|:.:||    |....:......|.|:.:...:.
 Worm   628 PNLSSLFMQQ----YSPAPHQFTPFMNMMPNVGSSAGGRQLYGQDDERKSYDKMSGSKPAAQQNQ 688

  Fly   802 SSGVSSNSGSTGNGGV 817
            .|....|.|:.|..|:
 Worm   689 HSQYQHNGGNLGKYGM 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ligNP_001260795.1 UBA_UBP2_like 85..122 CDD:270463 8/36 (22%)
CAF-1_p60_C 498..589 CDD:292150 28/121 (23%)
DUF3697 575..607 CDD:289261 6/41 (15%)
pqn-59NP_490727.1 UBA_UBP2_like 31..68 CDD:270463 9/38 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167172
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR16308
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.030

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