DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lig and ubap2l

DIOPT Version :9

Sequence 1:NP_001260795.1 Gene:lig / 35771 FlyBaseID:FBgn0020279 Length:1417 Species:Drosophila melanogaster
Sequence 2:XP_031746945.1 Gene:ubap2l / 100486308 XenbaseID:XB-GENE-1013953 Length:1153 Species:Xenopus tropicalis


Alignment Length:1392 Identity:352/1392 - (25%)
Similarity:540/1392 - (38%) Gaps:426/1392 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 KGGQDASKTDKPEKAQPKATTEQLRIAQITNSTTEDPQINEKVLLLLTMTQRSEEEVCCALNECD 111
            :|..:.:......|.:|:||.||:|:||:. |...|....|||..|:.:|.::::|...||::|:
 Frog    11 RGNSEQTPNQTQHKQRPQATAEQIRLAQMI-SDHNDADFEEKVKQLIDITGKNQDECVIALHDCN 74

  Fly   112 YDLEAAANFLIEELPQGAFAKYEKKRKNKAANNTADGAAGDGDWADGNGNADR-------REKSR 169
            .|:..|.|.|:|                                    ||:|.       ::|..
 Frog    75 GDINRAINVLLE------------------------------------GNSDTHSWEMVGKKKGV 103

  Fly   170 NRSSNRGGTRGSSDSRGWRGRETRENERNQRESREPWSGQNAGQDRGDDRANDNYRGQRNG--GG 232
            :.....|.|..|.:.     ||.|:.||:....|    |....:.||..|..: :|.|.||  ||
 Frog   104 SGQKEAGQTEPSEEV-----RENRDRERDYSRRR----GGAPRRGRGGSRGRE-FRAQENGLEGG 158

  Fly   233 RSGPGGGGRGGGFVSRSGRGGGRMGGRTGGPRGDRGSGGPGGAYGSGRGGNAN----------ED 287
            :||           ..||||..|  ||.|..||..|||..||.:.:...|..|          ||
 Frog   159 KSG-----------GSSGRGTER--GRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPSSTED 210

  Fly   288 HH-EVELWDNTI----------------AQNAEKQQQAHDDAW----GDWNNEEYEGSLKDSKVF 331
            .: ....|::|.                ..|..::......||    .:|..|::...|.::|:|
 Frog   211 SYGNSSTWNSTANFEPDDGTRHDYIGGEGSNYPREFSTAPGAWRTATEEWGTEDWNEDLSETKIF 275

  Fly   332 TTSNLATQSAANVVSGTGASVTAVP-------AAAGTEI-------SAPPGLEHQ---------- 372
            |.|                ||::||       ..||..|       .:|..||::          
 Frog   276 TAS----------------SVSSVPPPSENVTITAGQRIDLAVLLGKSPTSLENETSGLDSNQNT 324

  Fly   373 -LVQQGSHLEESSSSGPAAVTPPATL-------------------SGSATTP---LLQYSAAVSN 414
             :.|.|..:..:|...|.:...|.:.                   .|..||.   |.|:..|  .
 Frog   325 AMSQAGPLVFSNSKQNPISQASPGSSFSHHTMVSILGKGFSEGEPKGGTTTGSQFLEQFKTA--Q 387

  Fly   415 PPPQLQSQGTQSGAGTGASAAAGGGAGSTPSSF----VSASPDTFSSAAS--AAATLVHQAQKQQ 473
            ...||.:|.:||.|.:..|...  ||.|.|.|.    :.:..|.||...|  .|:|::     :.
 Frog   388 ALAQLAAQHSQSDATSNTSWDL--GAASQPPSLGQYDMKSPSDPFSKRQSFPQASTMM-----EV 445

  Fly   474 QLQQQTTPIKPSATLSVEQSQYFNSLASQGVSPGSVPVQSAPAGYAQNPVAAYSQTSTSVGVSQY 538
            .||::|..:..|:.:.|..|           ||......:||   ..:||::.:|:|        
 Frog   446 YLQEKTPVVSTSSAVPVCPS-----------SPLHGKSNTAP---QMSPVSSENQSS-------- 488

  Fly   539 PNTYANVFASGTAAGAGTAEQSQQQPQIRRARVKLPPPSKIPASAVEMPGDNALNNIGYLDVQFG 603
                              :.|..|| ::::.:.|....|||||.||||||.   ::|..|::|||
 Frog   489 ------------------SPQPAQQ-KMKQQKKKASLTSKIPALAVEMPGS---SDISGLNLQFG 531

  Fly   604 ALDFGTDDGFEP-LPEKVGSGFSIDGQQQQQQPDDYQSKSQQQQQVTLAAGLQSSQISDALNAAG 667
            ||.||:    || |||            .:..|....:.||.|.      .|.:|.:|::.|...
 Frog   532 ALLFGS----EPVLPE------------YESSPTTNVAVSQSQN------SLYTSPVSESPNTIA 574

  Fly   668 YTSRSTSQQQQGVSSAVNATIDQLTKSDPYGQTGGSGNAYQNAYQSSGASKTASGFPTTAPGGYS 732
             .::|.....||.||..:||...        |:...|..|:..     |::|     ...|...|
 Frog   575 -ANQSPESAYQGSSSIQSATFTP--------QSSTQGPVYEQR-----ATQT-----RRYPNPIS 620

  Fly   733 SSTYANVQSSVANSYQQQGYGSYQPSSYQQQAGSGAQSGTGAVSGGGGTATQNIP-VGGSSSQNS 796
            ||:.::.|..::.|  :.|:.|.|..:.|...               .....::| |...|....
 Frog   621 SSSSSSPQKDLSQS--KNGFSSVQAPTLQAPV---------------SVEVPSVPSVKADSPSAP 668

  Fly   797 TSVSTSSGVSSNSGSTGNGGVVSGQTGANQAAVSNNNSVSGSSSVSNVTAGVASGNVAGVGGGVS 861
            |.|..|..||::|..||        .||:.:.:|   |::.|..:.:....:             
 Frog   669 TIVPLSDPVSTSSLLTG--------AGAHSSQLS---SLAHSEDLQSAPTPL------------- 709

  Fly   862 QSGVSSGVGVPGGSASSVGVNVNNNSSSASSVGAATVAQTATGTTAAVLASLTNKNTSSSNSSGS 926
             |.:||....|  ::|||..:|            :|...|:..|..::.:|:|..:|:||....:
 Frog   710 -STLSSQHQTP--TSSSVRTSV------------STPLHTSVDTETSLHSSVTTFSTASSIVPTT 759

  Fly   927 GGSAATTTGNASGQGAGASTGGVGSSSGAGGAGSGGGSGSGLVPTNIQ------MVSQYIQT-GL 984
            ....|:::.|......|.|:    ||:.|....|...:.||..|.|:.      :.:.||.. ||
 Frog   760 PSVPASSSINVGNLVLGLSS----SSTIAPSTRSSIATSSGKAPPNLPPGVPPLLPNPYIMAPGL 820

  Fly   985 PY-YQQPVYSYEELQMMQQRVPHVQGYYDLNYP-PASLGAGRD-NLGSVTYSAMNDGRFARTDNN 1046
            .: |...||.|::|||:|.|.|  ..||.:.:| |::...||| :|.:..||. :..:|.|.| .
 Frog   821 LHAYPPQVYGYDDLQMLQTRFP--LDYYSIPFPTPSTPLTGRDGSLANNPYSG-DLAKFGRGD-A 881

  Fly  1047 SSPVGNVSSTMSQQAGSSA------------PMLNVPYAY----FYGG-NVMPGSFQYGTPAIYP 1094
            |||.  .::|::|...|.|            |.|...|:|    :|.| ..:|.:|||| ||::|
 Frog   882 SSPA--PATTLAQPQQSQAQGHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYG-PAVFP 943

  Fly  1095 QIPAA----------NTASGQQFPKPSY-SAGYGSTSYDTLSQTT--QDYSKGGYS-SSVNQQSK 1145
            ..|.:          ||::......||| |.|| ||.:|.:.|.:  .|:.||.:| :|...|:|
 Frog   944 VAPTSSKQHGVNVGVNTSAAAFQQAPSYGSHGY-STGFDDMGQVSGVGDFCKGAFSGASAAAQNK 1007

  Fly  1146 TQTVSNQSQAG-------TG-SDLTSSMYGKGHVALNKVNSYEKQSFHSGTP-PPFNMPNTQTAG 1201
            ....:|...||       || .|::.|:|.|..      .|:|||.||:||| ..||:|:...:|
 Frog  1008 AAVATNGPGAGVSVTSSNTGVPDISGSVYSKTQ------QSFEKQGFHTGTPATSFNLPSALGSG 1066

  Fly  1202 G-----TSAQPYGMYLPMP--------AAGHHNMIHQPIHQDS-----------------NSAGQ 1236
            |     |:|    .|.|.|        ...|..::|..:.||:                 :.|||
 Frog  1067 GPINPATAA----AYQPAPFMHILAPHQQPHSQILHHHLQQDAQLPYLQILCYHLLQDDQSGAGQ 1127

  Fly  1237 RQQ--STSQSKSAGKQGYSPSYWAGQN 1261
            |.|  |.:|...|.|..||...| |.|
 Frog  1128 RNQGASMTQKSQASKSAYSSYSW-GSN 1153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ligNP_001260795.1 UBA_UBP2_like 85..122 CDD:270463 12/36 (33%)
CAF-1_p60_C 498..589 CDD:292150 22/90 (24%)
DUF3697 575..607 CDD:289261 18/31 (58%)
ubap2lXP_031746945.1 UBA_UBP2_like 48..85 CDD:270463 12/36 (33%)
DUF3697 508..535 CDD:372135 18/29 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 133 1.000 Domainoid score I5011
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 148 1.000 Inparanoid score I4293
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003488
OrthoInspector 1 1.000 - - otm47527
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2380
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.050

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