DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12769 and LOC102555672

DIOPT Version :9

Sequence 1:NP_001286181.1 Gene:CG12769 / 35770 FlyBaseID:FBgn0033252 Length:713 Species:Drosophila melanogaster
Sequence 2:XP_006229003.1 Gene:LOC102555672 / 102555672 RGDID:7701959 Length:863 Species:Rattus norvegicus


Alignment Length:160 Identity:44/160 - (27%)
Similarity:60/160 - (37%) Gaps:45/160 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 SSRKVFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTKTLPYHCP 240
            :..|.:||..|...|...::..|||..|||.|||||:.|.|.|.....|..|..||:...||:|.
  Rat   296 TGEKPYECKQCGKAFRVNSSFWRHKKVHTGEKPYECKQCGKSFIYPSLLQTHERTHSAEKPYNCK 360

  Fly   241 ICNRGFQRQIAMRAHFQNEHVGQ------------------------HDLVKT--CPLCSYRAGS 279
            .|.:.|:...::|.|.:| |.|:                        |..||.  |..|......
  Rat   361 QCGKAFKSHSSLRVHERN-HTGEKPYECKQCGRSFIYPCLLQIHERTHSGVKPYGCKQCGKAFRR 424

  Fly   280 MKSLRIH------------------FFNRH 291
            :..||:|                  |.||:
  Rat   425 LSDLRVHERIHTGEKPYECKQCIKSFINRY 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12769NP_001286181.1 C2H2 Zn finger 183..203 CDD:275368 6/19 (32%)
zf-H2C2_2 195..218 CDD:290200 13/22 (59%)
C2H2 Zn finger 211..231 CDD:275368 6/19 (32%)
C2H2 Zn finger 239..255 CDD:275368 4/15 (27%)
C2H2 Zn finger 662..689 CDD:275371
C2H2 Zn finger 690..712 CDD:275371
LOC102555672XP_006229003.1 KRAB 4..>46 CDD:214630
KRAB 4..43 CDD:279668
COG5048 <166..322 CDD:227381 8/25 (32%)
C2H2 Zn finger 219..239 CDD:275368
C2H2 Zn finger 247..267 CDD:275368
COG5048 271..676 CDD:227381 44/160 (28%)
C2H2 Zn finger 275..295 CDD:275368
zf-H2C2_2 287..310 CDD:290200 4/13 (31%)
C2H2 Zn finger 303..323 CDD:275368 6/19 (32%)
zf-H2C2_2 315..340 CDD:290200 14/24 (58%)
C2H2 Zn finger 331..351 CDD:275368 6/19 (32%)
zf-H2C2_2 344..368 CDD:290200 9/23 (39%)
C2H2 Zn finger 359..379 CDD:275368 6/20 (30%)
zf-H2C2_2 371..396 CDD:290200 5/25 (20%)
C2H2 Zn finger 387..407 CDD:275368 0/19 (0%)
C2H2 Zn finger 415..435 CDD:275368 5/19 (26%)
zf-H2C2_2 427..450 CDD:290200 3/22 (14%)
C2H2 Zn finger 443..463 CDD:275368 3/12 (25%)
zf-H2C2_2 456..480 CDD:290200
C2H2 Zn finger 471..491 CDD:275368
zf-H2C2_2 484..506 CDD:290200
C2H2 Zn finger 499..519 CDD:275368
zf-H2C2_2 512..536 CDD:290200
C2H2 Zn finger 527..547 CDD:275368
COG5048 536..>827 CDD:227381
zf-H2C2_2 539..562 CDD:290200
C2H2 Zn finger 555..575 CDD:275368
zf-H2C2_2 567..592 CDD:290200
C2H2 Zn finger 583..603 CDD:275368
C2H2 Zn finger 611..631 CDD:275368
C2H2 Zn finger 639..659 CDD:275368
zf-H2C2_2 652..676 CDD:290200
C2H2 Zn finger 667..687 CDD:275368
zf-H2C2_2 679..704 CDD:290200
C2H2 Zn finger 695..715 CDD:275368
zf-H2C2_2 708..730 CDD:290200
C2H2 Zn finger 723..743 CDD:275368
C2H2 Zn finger 751..771 CDD:275368
zf-H2C2_2 764..788 CDD:290200
C2H2 Zn finger 779..799 CDD:275368
C2H2 Zn finger 807..827 CDD:275368
C2H2 Zn finger 835..855 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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