DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG14762 and lingo1a

DIOPT Version :9

Sequence 1:NP_001246198.1 Gene:CG14762 / 35768 FlyBaseID:FBgn0033250 Length:498 Species:Drosophila melanogaster
Sequence 2:XP_005174327.1 Gene:lingo1a / 564943 ZFINID:ZDB-GENE-080327-16 Length:615 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14762NP_001246198.1 leucine-rich repeat 85..105 CDD:275380
LRR_RI 93..384 CDD:238064
leucine-rich repeat 107..129 CDD:275380
leucine-rich repeat 131..154 CDD:275380
LRR_8 154..214 CDD:290566
leucine-rich repeat 155..178 CDD:275380
leucine-rich repeat 179..203 CDD:275380
leucine-rich repeat 204..227 CDD:275380
LRR_8 226..286 CDD:290566
leucine-rich repeat 228..251 CDD:275380
leucine-rich repeat 252..275 CDD:275380
LRR_8 276..335 CDD:290566
leucine-rich repeat 276..300 CDD:275380
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..349 CDD:275380
LRR_8 349..409 CDD:290566
leucine-rich repeat 350..373 CDD:275380
lingo1aXP_005174327.1 LRRNT 34..68 CDD:214470
LRR_RI <55..231 CDD:238064
leucine-rich repeat 66..89 CDD:275380
LRR_8 88..148 CDD:290566
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 114..137 CDD:275380
LRR_8 136..196 CDD:290566
leucine-rich repeat 138..185 CDD:275380
LRR_8 184..241 CDD:290566
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..257 CDD:275380
leucine-rich repeat 234..256 CDD:275380
LRR_8 257..316 CDD:290566
leucine-rich repeat 258..281 CDD:275380
leucine-rich repeat 282..305 CDD:275380
LRR_8 305..364 CDD:290566
leucine-rich repeat 306..329 CDD:275380
leucine-rich repeat 330..350 CDD:275380
TPKR_C2 362..>398 CDD:301599
I-set 421..507 CDD:254352
Ig 432..507 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.