DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14762 and lingo1a

DIOPT Version :10

Sequence 1:NP_001246198.1 Gene:CG14762 / 35768 FlyBaseID:FBgn0033250 Length:498 Species:Drosophila melanogaster
Sequence 2:XP_005174327.1 Gene:lingo1a / 564943 ZFINID:ZDB-GENE-080327-16 Length:615 Species:Danio rerio


Alignment Length:340 Identity:98/340 - (28%)
Similarity:146/340 - (42%) Gaps:42/340 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 RHLTIHNSSLAAIEENALSSLGAGLTQLDVSLNQMKTVPSQALQHLFHLLILNLNHNKITVIHNN 171
            |.:..|...|.::.|...|.    ...||:|.|::||:..........|..|.||.|.|:.|...
Zfish    46 RSVLCHRKKLMSVPEGIPSE----TRLLDLSKNRIKTINPDEFSAFPQLEELELNENTISAIEPG 106

  Fly   172 AFEGLETLEILTLYENKITQIDPEAFRGLEDHIKRLNLGGNDLTNIPQKALSILSTLKKLEIQEN 236
            ||..|..|:.|.|..||:..|....|.|| .::.:|::..|.:..:.......|..|:.||:.:|
Zfish   107 AFNNLYGLQTLGLRSNKLKLIQLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLRSLEVGDN 170

  Fly   237 KIRTISEGDFEGLQSLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKISVIDKDAFKGLEE-- 299
            .:..||...|.||.||:.|.|....:|:||...|:||..|.:|.|....|:.|...:||.|..  
Zfish   171 DLVFISHRAFHGLSSLEQLTLEKCNLTSVPTEAFTHLHSLVTLRLRNLNINSIRDYSFKRLYRLK 235

  Fly   300 ---------------------NLQYLRLGDNQIHTIPSEALRPLHRLRHLDLRNNNINVLAEDAF 343
                                 ||..|.:.:..:.:||..|||.|..||.|::..|.|.::.    
Zfish   236 VLEIANWPYLDTMTTNCLYGLNLTSLTITNANLTSIPYLALRHLVYLRFLNMSYNPIQMIE---- 296

  Fly   344 TGFGDSL-TFLNLQK-----NDIKVLPSLLFENLNSLETLNLQNNKLQRIPQDIMEPVIDTLRII 402
               |:.| ..|.||:     ..:.|:....|..||.|:.||:.:|.|..:.:.:...| ..|..:
Zfish   297 ---GNRLHDLLRLQELYLVGGRLSVIEPYSFRGLNYLKVLNVSSNFLTTLEESVFHSV-GNLETL 357

  Fly   403 DITDNPLNCSCELTW 417
            .:.||||.|.|.|.|
Zfish   358 ALHDNPLACDCRLLW 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14762NP_001246198.1 leucine-rich repeat 85..105 CDD:275380
leucine-rich repeat 107..129 CDD:275380 5/21 (24%)
LRR <131..410 CDD:443914 88/307 (29%)
leucine-rich repeat 131..154 CDD:275380 6/22 (27%)
leucine-rich repeat 155..178 CDD:275380 10/22 (45%)
leucine-rich repeat 179..203 CDD:275380 9/23 (39%)
leucine-rich repeat 204..227 CDD:275380 3/22 (14%)
leucine-rich repeat 228..251 CDD:275380 9/22 (41%)
leucine-rich repeat 252..275 CDD:275380 9/22 (41%)
leucine-rich repeat 276..300 CDD:275380 8/46 (17%)
leucine-rich repeat 301..324 CDD:275380 8/22 (36%)
leucine-rich repeat 325..349 CDD:275380 6/23 (26%)
leucine-rich repeat 350..373 CDD:275380 7/28 (25%)
lingo1aXP_005174327.1 LRRNT 34..68 CDD:214470 5/25 (20%)
leucine-rich repeat 66..89 CDD:275380 6/22 (27%)
LRR <69..>279 CDD:443914 63/210 (30%)
leucine-rich repeat 90..113 CDD:275380 10/22 (45%)
leucine-rich repeat 114..137 CDD:275380 9/23 (39%)
leucine-rich repeat 138..185 CDD:275380 12/46 (26%)
leucine-rich repeat 186..209 CDD:275380 9/22 (41%)
leucine-rich repeat 210..257 CDD:275380 8/46 (17%)
leucine-rich repeat 234..256 CDD:275380 0/21 (0%)
leucine-rich repeat 258..281 CDD:275380 8/22 (36%)
leucine-rich repeat 282..305 CDD:275380 7/29 (24%)
LRR_8 305..364 CDD:404697 15/59 (25%)
leucine-rich repeat 306..329 CDD:275380 5/22 (23%)
leucine-rich repeat 330..350 CDD:275380 5/19 (26%)
PCC 334..>416 CDD:188093 13/40 (33%)
Ig 416..507 CDD:472250
Ig strand B 435..439 CDD:409353
Ig strand C 448..452 CDD:409353
Ig strand E 473..477 CDD:409353
Ig strand F 487..492 CDD:409353
Ig strand G 500..503 CDD:409353
Blue background indicates that the domain is not in the aligned region.

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