DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG14762 and Slit2

DIOPT Version :10

Sequence 1:NP_001246198.1 Gene:CG14762 / 35768 FlyBaseID:FBgn0033250 Length:498 Species:Drosophila melanogaster
Sequence 2:XP_038948069.1 Gene:Slit2 / 360272 RGDID:69310 Length:1538 Species:Rattus norvegicus


Alignment Length:601 Identity:149/601 - (24%)
Similarity:207/601 - (34%) Gaps:213/601 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAGIQLQSGCTMVVTVVLLLQVLVMDQVLGQGPPQTQVCPEQSEIAPCICTVKKNGLDILCETTD 65
            |:||..|   |:.:::.|:|.:|  :||      ..|.||.|     |.|    :|..:.|    
  Rat     1 MSGIGWQ---TLSLSLALVLSIL--NQV------APQACPAQ-----CSC----SGSTVDC---- 41

  Fly    66 LAHITKSMGTLKGKSPIIFYLKLRHNNLPKLQGFVFLALDIRHLTIHNSSLAAIEENALSSLGAG 130
                                                          |..:|.::..|    :...
  Rat    42 ----------------------------------------------HGLALRSVPRN----IPRN 56

  Fly   131 LTQLDVSLNQMKTVPSQALQHLFHLLILNLNHNKITVIHNNAFEGLETLEILTLYENKITQIDPE 195
            ..:||::.|.:..:.......|.||.:|.|..|||:.|...||:.|:.||.|.|..|.: |:.||
  Rat    57 TERLDLNGNNITRITKTDFAGLRHLRVLQLMENKISTIERGAFQDLKELERLRLNRNNL-QLFPE 120

  Fly   196 -AFRGLEDHIKRLNLGGNDLTNIPQKALSILSTLKKLEIQENKIRTISEGDFEGLQSLDSLILAH 259
             .|.|.. .:.||:|..|.:..||:||......:|.|::..|:|..|.:|.|..|:.|:.|.|.:
  Rat   121 LLFLGTA-KLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFRALRDLEVLTLNN 184

  Fly   260 NMITTVPANVFSHLTLL-------NSL-----------------------------ELEGNKISV 288
            |.||.:....|:|:..|       |:|                             .|.|:.::.
  Rat   185 NNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPSHLRGHNVAE 249

  Fly   289 IDKDAF---------------------------------KG-------LEENLQYLRLGDNQIHT 313
            :.|..|                                 ||       |.|.:..:||..|.|..
  Rat   250 VQKREFVCSGHQSFMAPSCSVLHCPIACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNSIRV 314

  Fly   314 IPSEALRPLHRLRHLDLRNNNINVLAEDAFTGFGDSLTFLNLQKNDIKVLPSLLFENLNSLETLN 378
            ||..|..|..:||.|||.||.|:.||.|||.|. .||..|.|..|.|..||..|||.|.||:.|.
  Rat   315 IPPGAFSPYKKLRRLDLSNNQISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLL 378

  Fly   379 LQNNKLQ--RIP------------------QDIMEPVIDTLRIID---ITDNPLNCSCELTWFPK 420
            |..||:.  |:.                  |.:.:.....||.|.   :..||..|.|.|.|...
  Rat   379 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTFSALRAIQTMHLAQNPFICDCHLKWLAD 443

  Fly   421 LLED---------------LKNKDDEMSQKKKPLCHMSLDNREYFVQ-----------------A 453
            .|..               |.||.....:.||..|..   ..:||:.                 |
  Rat   444 YLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSA---KEQYFIPGTEDYRSKLSGDCFADLA 505

  Fly   454 MPTEKMHCAGLNVSPS 469
            .| ||..|.|..|..|
  Rat   506 CP-EKCRCEGTTVDCS 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14762NP_001246198.1 leucine-rich repeat 85..105 CDD:275380 0/19 (0%)
leucine-rich repeat 107..129 CDD:275380 3/21 (14%)
LRR <131..410 CDD:443914 107/378 (28%)
leucine-rich repeat 131..154 CDD:275380 4/22 (18%)
leucine-rich repeat 155..178 CDD:275380 10/22 (45%)
leucine-rich repeat 179..203 CDD:275380 10/24 (42%)
leucine-rich repeat 204..227 CDD:275380 8/22 (36%)
leucine-rich repeat 228..251 CDD:275380 8/22 (36%)
leucine-rich repeat 252..275 CDD:275380 8/22 (36%)
leucine-rich repeat 276..300 CDD:275380 10/99 (10%)
leucine-rich repeat 301..324 CDD:275380 8/22 (36%)
leucine-rich repeat 325..349 CDD:275380 14/23 (61%)
leucine-rich repeat 350..373 CDD:275380 11/22 (50%)
Slit2XP_038948069.1 LRRNT 27..58 CDD:214470 10/93 (11%)
leucine-rich repeat 38..56 CDD:275380 4/71 (6%)
LRR <56..>211 CDD:443914 51/156 (33%)
leucine-rich repeat 57..80 CDD:275380 4/22 (18%)
leucine-rich repeat 81..104 CDD:275380 10/22 (45%)
leucine-rich repeat 105..128 CDD:275380 10/24 (42%)
leucine-rich repeat 129..152 CDD:275380 8/22 (36%)
leucine-rich repeat 153..176 CDD:275380 8/22 (36%)
leucine-rich repeat 177..200 CDD:275380 8/22 (36%)
PCC 182..>319 CDD:188093 23/136 (17%)
leucine-rich repeat 201..325 CDD:275380 19/123 (15%)
LRR <302..667 CDD:443914 68/224 (30%)
leucine-rich repeat 326..349 CDD:275380 14/23 (61%)
leucine-rich repeat 350..370 CDD:275380 9/19 (47%)
leucine-rich repeat 374..397 CDD:275380 6/22 (27%)
leucine-rich repeat 398..419 CDD:275380 1/20 (5%)
leucine-rich repeat 422..523 CDD:275380 24/103 (23%)
leucine-rich repeat 537..559 CDD:275380
leucine-rich repeat 560..583 CDD:275380
LRR 564..>861 CDD:443914
leucine-rich repeat 584..607 CDD:275380
leucine-rich repeat 608..631 CDD:275380
leucine-rich repeat 632..655 CDD:275380
leucine-rich repeat 656..747 CDD:275380
leucine-rich repeat 748..778 CDD:275380
leucine-rich repeat 779..802 CDD:275380
leucine-rich repeat 803..826 CDD:275380
leucine-rich repeat 827..848 CDD:275380
PCC 832..>1013 CDD:188093
leucine-rich repeat 851..863 CDD:275378
EGF 1002..1029 CDD:394967
EGF_CA 1047..1082 CDD:238011
EGF_CA 1085..1121 CDD:238011
LamG 1192..1325 CDD:214598
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.