DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG14762 and Slitrk1

DIOPT Version :9

Sequence 1:NP_001246198.1 Gene:CG14762 / 35768 FlyBaseID:FBgn0033250 Length:498 Species:Drosophila melanogaster
Sequence 2:NP_001100753.1 Gene:Slitrk1 / 306147 RGDID:1308858 Length:696 Species:Rattus norvegicus


Alignment Length:678 Identity:141/678 - (20%)
Similarity:221/678 - (32%) Gaps:245/678 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LLLQVLVMDQVL--GQGPPQTQVCPEQSEIAPCICTVKKNGLDILCE-------------TTDLA 67
            :||.:|:::..|  ..|.....||.|:.    |.|...:..|.:.||             |:...
  Rat     1 MLLWILLLETSLCFAAGNVTGDVCKEKI----CSCNEIEGDLHVDCEKKGFTSLQRFTAPTSQFY 61

  Fly    68 HITKSMGTLKGKSP---IIFY----LKLRHNNLPKLQGFVFLALD-IRHLTIHNSSLAAIEENAL 124
            |:.....:|....|   ..||    |.:.:|.|.::....||.|. ::.|.|:|:.:.:..:...
  Rat    62 HLFLHGNSLTRLFPNEFANFYNAVSLHMENNGLHEIVPGAFLGLQLVKRLHINNNKIKSFRKQTF 126

  Fly   125 SSLGAGLTQLDVSLNQMKTVPSQALQHLFHLLILNLNHNKITVIHNNAF---------------- 173
            ..|. .|..|....|.::.:...|.|.|..|.:|.||.|.|:.:..|.|                
  Rat   127 LGLD-DLEYLQADFNLLRDIDPGAFQDLNKLEVLILNDNLISTLPANVFQYVPITHLDLRGNRLK 190

  Fly   174 -----EGLE-----------------TLEILTLYE---------------------------NKI 189
                 |.||                 |.::|:|.|                           |:.
  Rat   191 TLPYEEVLEQIPGIAEILLEDNPWDCTCDLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNET 255

  Fly   190 TQID---------------------------PEAFR--GLEDHIK---------------RLNL- 209
            |:.|                           |..|:  |.::|..               :|.: 
  Rat   256 TEQDLCPLKNRVDSSLPAPPAQEETFAPGPLPTPFKINGQDEHATPGAVPNGGTKIPGNWQLKIK 320

  Fly   210 ----------------------GGNDLTNIPQKALSI----------------LSTLKKLEIQEN 236
                                  ||....:||...|.:                ||.:::|.:::|
  Rat   321 PTPPIATGSARNKPPVHGLPCPGGCSCDHIPGSGLKMNCNNRNVSSLADLKPKLSNVQELFLRDN 385

  Fly   237 KIRTISEGDFEGLQSLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKISVIDKDAFKGLEENL 301
            ||.:|....|...::|..|.|.:|.|..:..|.|.:|..|..|.::.|.:..:.::.|.|| :||
  Rat   386 KIHSIRRSHFVDYKNLILLDLGNNNIANIENNTFKNLLDLRWLYMDSNYLDTLSREKFAGL-QNL 449

  Fly   302 QYLRLGDNQIHTIPSEALRPLHRLRHLDLRNNNINVLAEDAFTGFGDSLTFLNLQKNDIKVLPSL 366
            :||.:..|.|..|.......:.:||.|.|.||.:..|..|.|.|.                    
  Rat   450 EYLNVEYNAIQLILPGTFNAMPKLRILILNNNLLRSLPVDVFAGV-------------------- 494

  Fly   367 LFENLNSLETLNLQNNKLQRIPQDIMEPVIDTLRI---IDITDNPLNCSCELTWFPK-------- 420
                  ||..|:|.||....:|   :..|:|.|..   ||:..||..|||.:..|.:        
  Rat   495 ------SLSKLSLHNNYFMYLP---VAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQWAERLGSE 550

  Fly   421 -LLEDLK--------NKDDEMSQKKKPLCHMSLDNRE----YFVQAMPTEKMH---CAGLNVSPS 469
             |:.|||        .||           .|.|.|.|    .:.:..||...|   ..|| ....
  Rat   551 VLMSDLKCETPVNFFRKD-----------FMLLSNDEICPQLYAKISPTLTSHSKNSTGL-AETG 603

  Fly   470 PTSGGLMRILQVNILAQIAVCSVAFLTS 497
            ..|...:...:|:|...:....:.|:||
  Rat   604 THSNSYLDTSRVSISVLVPGLLLVFVTS 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14762NP_001246198.1 leucine-rich repeat 85..105 CDD:275380 6/23 (26%)
LRR_RI 93..384 CDD:238064 87/439 (20%)
leucine-rich repeat 107..129 CDD:275380 4/21 (19%)
leucine-rich repeat 131..154 CDD:275380 6/22 (27%)
LRR_8 154..214 CDD:290566 25/191 (13%)
leucine-rich repeat 155..178 CDD:275380 11/60 (18%)
leucine-rich repeat 179..203 CDD:275380 9/79 (11%)
leucine-rich repeat 204..227 CDD:275380 7/76 (9%)
LRR_8 226..286 CDD:290566 18/59 (31%)
leucine-rich repeat 228..251 CDD:275380 6/22 (27%)
leucine-rich repeat 252..275 CDD:275380 8/22 (36%)
LRR_8 276..335 CDD:290566 19/58 (33%)
leucine-rich repeat 276..300 CDD:275380 6/23 (26%)
leucine-rich repeat 301..324 CDD:275380 6/22 (27%)
leucine-rich repeat 325..349 CDD:275380 10/23 (43%)
LRR_8 349..409 CDD:290566 13/62 (21%)
leucine-rich repeat 350..373 CDD:275380 0/22 (0%)
Slitrk1NP_001100753.1 leucine-rich repeat 39..60 CDD:275380 3/20 (15%)
leucine-rich repeat 62..83 CDD:275380 4/20 (20%)
leucine-rich repeat 84..107 CDD:275380 6/22 (27%)
LRR_8 108..166 CDD:290566 15/58 (26%)
leucine-rich repeat 108..131 CDD:275380 4/23 (17%)
leucine-rich repeat 132..155 CDD:275380 6/22 (27%)
LRR_8 155..213 CDD:290566 11/57 (19%)
leucine-rich repeat 156..177 CDD:275380 8/20 (40%)
TPKR_C2 212..>250 CDD:301599 4/37 (11%)
leucine-rich repeat 356..372 CDD:275380 0/15 (0%)
leucine-rich repeat 377..400 CDD:275380 6/22 (27%)
leucine-rich repeat 401..424 CDD:275380 8/22 (36%)
LRR_8 425..483 CDD:290566 19/58 (33%)
leucine-rich repeat 425..448 CDD:275380 6/23 (26%)
leucine-rich repeat 449..472 CDD:275380 6/22 (27%)
LRR_8 471..530 CDD:290566 22/87 (25%)
leucine-rich repeat 473..495 CDD:275380 10/47 (21%)
leucine-rich repeat 496..520 CDD:275380 9/26 (35%)
TPKR_C2 529..579 CDD:301599 16/60 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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