DRSC/TRiP Functional Genomics Resources

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Protein Alignment Odc2 and Ldc1

DIOPT Version :9

Sequence 1:NP_477053.2 Gene:Odc2 / 35767 FlyBaseID:FBgn0013308 Length:393 Species:Drosophila melanogaster
Sequence 2:XP_006503256.1 Gene:Ldc1 / 332942 MGIID:2685699 Length:469 Species:Mus musculus


Alignment Length:376 Identity:140/376 - (37%)
Similarity:215/376 - (57%) Gaps:16/376 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 IRKVIEQADLEHLDQALNICDLSSLERKLRLWHKLMPRIEPHYAVKCNDDPVVVKFLADLGTGFD 81
            :.|.|::..:.....|..:.||..|..:.|.:.:.:||::|.||||||.:|.|:..||.||||||
Mouse    36 VLKKIKELSISGRQDAFMVADLDVLVSRHRTFLQALPRVQPFYAVKCNSNPWVLLVLAALGTGFD 100

  Fly    82 CASKNELKLVLGLGVSPERIIFAHPCRPASHLRYAKEQQVVNGTVDNEYEIYKLRKHYPDSNLIV 146
            |||:.||:.||||||:|.|||||:||:..||:::|....|...|.|||.|:.||.:::|.:.|::
Mouse   101 CASQGELEQVLGLGVAPSRIIFANPCKAVSHIQFAARCGVQLLTFDNEEELIKLARYHPRARLVL 165

  Fly   147 RFKSEAKKALCPLGDKYGCDAEADAAALMLLAKALGLKVTGTSFHVGSGCSEVEAYDRAIEKAEN 211
            |.::...::..||..|:|...|| ...|:.:|:.|||.|.|.||||||.|...|:|.:||.....
Mouse   166 RIQTLDSQSTFPLHTKFGAHLEA-CGHLLQVARELGLAVVGASFHVGSDCHTPESYRQAIADCHR 229

  Fly   212 IFKVGEMIGHKMELLDVGGGFPGI--DDEMFEEIAQSVNTSVELRFPDKR-IRIISEPGRFFVEA 273
            :|::|...||.|.|||:||||||:  .:..|||:|:.:||::...||::. |.:|:|||||:..:
Mouse   230 VFEMGCKAGHHMSLLDLGGGFPGVKGSEAKFEEVARVINTALAQYFPEETGIEVIAEPGRFYAGS 294

  Fly   274 AYTLICKVHAKREVRSKDGKLDTMMYYLNDGIFGAFAGMFYYPEEVAPELYLDEAESLPKLKSVI 338
            ..|....:..|:......|. ..:.||||:|.:|.|......|....|.:..:.....|.....:
Mouse   295 VCTAAVNIIVKKSSLDPGGH-RKLAYYLNEGHYGVFRLFLRDPVPRIPIVVKEFPSEPPLFPCTL 358

  Fly   339 WGPSCDAMDKI--SDLLLPNLNPGDLLGFRNMGAYTMPIASPFNGFDVPET 387
            :||:|||.|::  :::.||.|         ::|||......|.:|.:..|:
Mouse   359 YGPTCDAYDRLFSTEVQLPEL---------DVGAYWRQYLRPGHGQNEEES 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Odc2NP_477053.2 LysA 21..385 CDD:223098 138/368 (38%)
PLPDE_III_ODC 30..390 CDD:143482 138/363 (38%)
Ldc1XP_006503256.1 PLPDE_III_ODC 50..382 CDD:143482 132/342 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838052
Domainoid 1 1.000 209 1.000 Domainoid score I2835
eggNOG 1 0.900 - - E1_COG0019
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 317 1.000 Inparanoid score I2524
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62480
OrthoDB 1 1.010 - - D306092at33208
OrthoFinder 1 1.000 - - FOG0000435
OrthoInspector 1 1.000 - - mtm8750
orthoMCL 1 0.900 - - OOG6_100277
Panther 1 1.100 - - O PTHR11482
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X335
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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