DRSC/TRiP Functional Genomics Resources

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Protein Alignment Odc2 and Odc1

DIOPT Version :9

Sequence 1:NP_477053.2 Gene:Odc2 / 35767 FlyBaseID:FBgn0013308 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_001289012.1 Gene:Odc1 / 24609 RGDID:3227 Length:461 Species:Rattus norvegicus


Alignment Length:403 Identity:161/403 - (39%)
Similarity:239/403 - (59%) Gaps:27/403 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 DEELNIRKVIEQA--DLEHLD--QALNICDLSSLERKLRLWHKLMPRIEPHYAVKCNDDPVVVKF 72
            ||....:.:::|.  ::...|  .|..:.||..:.:|...|.|.:||:.|.|||||||...:|..
  Rat    15 DEGFTAKDILDQKINEVSSSDDKDAFYVADLGDVLKKHLRWLKALPRVTPFYAVKCNDSRAIVST 79

  Fly    73 LADLGTGFDCASKNELKLVLGLGVSPERIIFAHPCRPASHLRYAKEQQVVNGTVDNEYEIYKLRK 137
            ||.:|||||||||.|::||.||||.|||||:|:||:..|.::||....|...|.|:|.|:.|:.:
  Rat    80 LAAIGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVAR 144

  Fly   138 HYPDSNLIVRFKSEAKKALCPLGDKYGCDAEADAAALMLLAKALGLKVTGTSFHVGSGCSEVEAY 202
            .:|.:.|::|..::..||:|.|..|:|...:. :..|:..||.|.:.|.|.||||||||::.|.:
  Rat   145 AHPKAKLVLRIATDDSKAVCRLSVKFGATLKT-SRLLLERAKELNIDVIGVSFHVGSGCTDPETF 208

  Fly   203 DRAIEKAENIFKVGEMIGHKMELLDVGGGFPGIDDE--MFEEIAQSVNTSVELRFP-DKRIRIIS 264
            .:|:..|..:|.:|..:|..|.|||:||||||.:|.  .||||...:|.:::..|| |..:|||:
  Rat   209 VQAVSDARCVFDMGTEVGFSMYLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIA 273

  Fly   265 EPGRFFVEAAYTLICKVHAKREV-RSKDGKLD-------TMMYYLNDGIFGAFAGMFYYPEEVAP 321
            ||||::|.:|:||...:.||:.| :.:.|..|       |:|||:|||::|:|..:.|....|..
  Rat   274 EPGRYYVASAFTLAVNIIAKKTVWKEQTGSDDEDESNEQTLMYYVNDGVYGSFNCILYDHAHVKA 338

  Fly   322 ELYLDEAESLPK-----LKSVIWGPSCDAMDKISD-LLLPNLNPGDLLGFRNMGAYTMPIASPFN 380
            .|     :..||     ..|.||||:||.:|:|.: ..||.::.||.:.|.||||||:..||.||
  Rat   339 LL-----QKRPKPDEKYYSSSIWGPTCDGLDRIVERCSLPEMHVGDWMLFENMGAYTVAAASTFN 398

  Fly   381 GFDVPETRFFKAK 393
            ||..|...:..::
  Rat   399 GFQRPNIYYVMSR 411

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Odc2NP_477053.2 LysA 21..385 CDD:223098 158/384 (41%)
PLPDE_III_ODC 30..390 CDD:143482 158/378 (42%)
Odc1NP_001289012.1 PLPDE_III_ODC 37..408 CDD:143482 157/376 (42%)
LysA 40..408 CDD:223098 156/373 (42%)
Pyridoxal phosphate binding. /evidence=ECO:0000250|UniProtKB:P11926 274..277 2/2 (100%)